Results 141 - 160 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 110137 | 0.81 | 0.781339 |
Target: 5'- uUGUAUAUAGCUUAGGUaUUAAAGGa- -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCCca -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 162433 | 0.81 | 0.791244 |
Target: 5'- gUGUGUAUAGCUUAGGUgUUAAAGaGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 140962 | 0.81 | 0.781339 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAaGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUcCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 23506 | 0.81 | 0.800983 |
Target: 5'- uUGUAUAUAGCUUAaGUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 146763 | 0.81 | 0.819915 |
Target: 5'- aGUAUAUacauGGUUUAGGUgUUAGAGGGUa -3' miRNA: 3'- aCAUAUG----UCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 80097 | 0.81 | 0.800983 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAaGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 130911 | 0.81 | 0.819914 |
Target: 5'- uUGUuUAUAGCUUAGGaUUUAAAGGGUa -3' miRNA: 3'- -ACAuAUGUCGAAUCCaGAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 134191 | 0.81 | 0.810543 |
Target: 5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 97476 | 0.81 | 0.810543 |
Target: 5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 30828 | 0.81 | 0.810543 |
Target: 5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 136001 | 0.81 | 0.810543 |
Target: 5'- ----cAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- acauaUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 104866 | 0.81 | 0.800983 |
Target: 5'- -aUAUAUAGCUUAGGUagguaUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAg----AAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 124420 | 0.81 | 0.810543 |
Target: 5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 100700 | 0.81 | 0.810543 |
Target: 5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 167291 | 0.82 | 0.750732 |
Target: 5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 31459 | 0.82 | 0.771278 |
Target: 5'- aGUAUAUAGCUUAGGU---AAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCCAgaaUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 142025 | 0.82 | 0.74027 |
Target: 5'- gUGUAUAUAGCUUAGGUgUUAAAaGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 78119 | 0.82 | 0.74027 |
Target: 5'- aGUAUAUAGCUUAGaGUUUaUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUC-CAGA-AUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 27812 | 0.85 | 0.598396 |
Target: 5'- uUGUAUAUAGCUUAGGcaUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 114438 | 0.85 | 0.598396 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGGa- -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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