Results 61 - 80 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 43887 | 0.8 | 0.829087 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGaGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCcCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 10428 | 0.8 | 0.829087 |
Target: 5'- uUGUAUACGGCUUAcGUaUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 29494 | 0.8 | 0.838051 |
Target: 5'- -aUAUAUAGCUUAGGUgUUaAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUCCAgAA-UUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 143802 | 0.8 | 0.829087 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAGaGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 13436 | 0.8 | 0.838051 |
Target: 5'- aGUAUAUAGCUUAaGUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 155244 | 0.8 | 0.838051 |
Target: 5'- cGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 6230 | 0.8 | 0.846796 |
Target: 5'- aGUAUAUAGCUUAGuUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 87103 | 0.8 | 0.855315 |
Target: 5'- -uUAUAUAGCUUAGGggUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 49473 | 0.8 | 0.846797 |
Target: 5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 151227 | 0.8 | 0.846797 |
Target: 5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 146943 | 0.8 | 0.846797 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 105306 | 0.8 | 0.846797 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 40095 | 0.8 | 0.846797 |
Target: 5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 167185 | 0.8 | 0.829087 |
Target: 5'- cGUAUAUAGCUUAGGUgUUAAAaGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUcCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 43022 | 0.8 | 0.846797 |
Target: 5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 134437 | 0.79 | 0.879427 |
Target: 5'- ----cACAGCUUAGGUaUUAAAGGGUu -3' miRNA: 3'- acauaUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 3477 | 0.78 | 0.901233 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAaaaucGAGuGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAU-----UUC-CCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 165978 | 0.78 | 0.907965 |
Target: 5'- uUGUAUAUGGCUUAuGUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 19913 | 0.78 | 0.914423 |
Target: 5'- aUGUAUAUAGCUUAaGUaUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 131991 | 0.78 | 0.914423 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGa- -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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