miRNA display CGI


Results 81 - 100 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 16600 0.77 0.937476
Target:  5'- -aUAUACAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 178441 0.77 0.947338
Target:  5'- aGUAUAUAaUUUAGGUgUUAAAGGGUg -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 55157 0.77 0.947338
Target:  5'- gUGUAUAUAGCUUGaGagUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 162576 0.77 0.942544
Target:  5'- aGUAUAUAGaUUAGGUgUUAAAGGGc -3'
miRNA:   3'- aCAUAUGUCgAAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 52206 0.77 0.947338
Target:  5'- gGUAUAUcaCUUAGGUgUUAAAGGGUg -3'
miRNA:   3'- aCAUAUGucGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 71498 0.77 0.942544
Target:  5'- -uUAUAUAGCcUAGGUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGaAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 75852 0.77 0.942544
Target:  5'- uUGUAUAUAGUUcAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAaUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 29135 0.77 0.93213
Target:  5'- -aUAUAUAGUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 92201 0.76 0.951859
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAuGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 65798 0.76 0.956113
Target:  5'- --cAUAUAGCUcAGGUgUUAAAGGGUu -3'
miRNA:   3'- acaUAUGUCGAaUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 169167 0.76 0.963836
Target:  5'- --gAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- acaUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 135930 0.76 0.956113
Target:  5'- aGUAUGUAGCUUAGGUgUUAggaucaAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAU------UUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 75130 0.76 0.951859
Target:  5'- -aUAUAUAGCUUAGGUauaAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 169577 0.76 0.956113
Target:  5'- aGUGUAUAGUUUAGGUgUUAAAaGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 15191 0.75 0.967318
Target:  5'- uUGUAUAUAGCUUAcaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 39612 0.75 0.973557
Target:  5'- aGUGaauUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- aCAU---AUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 12862 0.75 0.973557
Target:  5'- gUGUAUAUAaCUUAGGagUUAAGGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 137929 0.75 0.973557
Target:  5'- uUGUAUAUAGCUUAaaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 135222 0.75 0.978883
Target:  5'- aGUAUAUAGUUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 11449 0.75 0.978883
Target:  5'- cGUAUAUAGCUUAGGUgUUAAcucGGUc -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUuc-CCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.