Results 101 - 120 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 11449 | 0.75 | 0.978883 |
Target: 5'- cGUAUAUAGCUUAGGUgUUAAcucGGUc -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUuc-CCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 135222 | 0.75 | 0.978883 |
Target: 5'- aGUAUAUAGUUUAGaUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 118111 | 0.74 | 0.981227 |
Target: 5'- gUGUAUAUAGUUagGGGUC--AAAGGGUa -3' miRNA: 3'- -ACAUAUGUCGAa-UCCAGaaUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 36357 | 0.74 | 0.981227 |
Target: 5'- -aUAUAUAGCUUAGGU---AAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgaaUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 48290 | 0.74 | 0.98337 |
Target: 5'- -aUAUAUAGCUUAaGUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 76684 | 0.74 | 0.98337 |
Target: 5'- -aUAUAUAGCUUAaGUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 156432 | 0.74 | 0.98337 |
Target: 5'- aGUAUAUAGCUUAaaUgUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUccAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 76246 | 0.74 | 0.985323 |
Target: 5'- -aUAUAUAaCUUAGGUgUUAAAGGGUg -3' miRNA: 3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 72257 | 0.74 | 0.985323 |
Target: 5'- -aUAUAUAGCUUAGuUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 96037 | 0.74 | 0.985323 |
Target: 5'- -aUAUAUAaCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 143064 | 0.74 | 0.985323 |
Target: 5'- -aUAUAUAGCUUAGaUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 63398 | 0.74 | 0.987096 |
Target: 5'- uUGUAUAUAGCUUAGaUgUUAAAGaGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCcAgAAUUUC-CCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 162754 | 0.73 | 0.990143 |
Target: 5'- -aUAUAUAGCUUAGGUaUUAAAGGa- -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCca -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 71687 | 0.73 | 0.990143 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAGAa--- -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUccca -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 101107 | 0.73 | 0.991438 |
Target: 5'- uUGUAUAUuGCUUAaGUgUUAAAGGGUg -3' miRNA: 3'- -ACAUAUGuCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 69409 | 0.73 | 0.991438 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAa--- -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUccca -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 74813 | 0.73 | 0.992595 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAaGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUcCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 145976 | 0.73 | 0.992595 |
Target: 5'- -aUAUAUAGCUUAaGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 180393 | 0.73 | 0.993624 |
Target: 5'- aGUAUAUAGCUUAauUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUccAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 50495 | 0.72 | 0.994535 |
Target: 5'- gUGUGUAUcuAGUUUAGGUgUUAAAGGa- -3' miRNA: 3'- -ACAUAUG--UCGAAUCCAgAAUUUCCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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