miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 57268 0.96 0.194058
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 63270 0.68 0.99987
Target:  5'- aUGUucAUAUAGCUUaaAGGU--UAAAGGGUu -3'
miRNA:   3'- -ACA--UAUGUCGAA--UCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 63398 0.74 0.987096
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGaGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUC-CCA- -5'
28250 5' -45.3 NC_005902.1 + 65669 0.66 0.999992
Target:  5'- aGUAUA-AGcCUUAGGaUUUAAAGGGg -3'
miRNA:   3'- aCAUAUgUC-GAAUCCaGAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 65798 0.76 0.956113
Target:  5'- --cAUAUAGCUcAGGUgUUAAAGGGUu -3'
miRNA:   3'- acaUAUGUCGAaUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 67032 0.91 0.349826
Target:  5'- aGUAUAUAGCUUAGGagUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 67392 0.67 0.999989
Target:  5'- gUGUAUAUAGCUUAaGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 67748 0.66 0.999997
Target:  5'- aGUAUAUAGCUUAaGUgUUAAAaGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 68110 0.66 0.999992
Target:  5'- --cAUAUAaCUUAGGUggUAGAGGGUa -3'
miRNA:   3'- acaUAUGUcGAAUCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 68311 0.71 0.998672
Target:  5'- uUGcAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACaUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 69159 0.71 0.997651
Target:  5'- -uUGUAUAGuCUUAGGaaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUC-GAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 69211 0.67 0.999958
Target:  5'- gUGUAUAUAaCUUAGaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUcGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 69409 0.73 0.991438
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAa--- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 71498 0.77 0.942544
Target:  5'- -uUAUAUAGCcUAGGUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGaAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 71687 0.73 0.990143
Target:  5'- uUGUAUAUAGCUUAGGUgUUAGAa--- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 72257 0.74 0.985323
Target:  5'- -aUAUAUAGCUUAGuUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 73971 0.66 0.999992
Target:  5'- -aUAUAUgaUUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGucGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 74813 0.73 0.992595
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 75130 0.76 0.951859
Target:  5'- -aUAUAUAGCUUAGGUauaAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 75852 0.77 0.942544
Target:  5'- uUGUAUAUAGUUcAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAaUCCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.