miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 76123 0.94 0.233737
Target:  5'- uUGcAUAUAGCUUAGGUCUUAAAGGGUu -3'
miRNA:   3'- -ACaUAUGUCGAAUCCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 76246 0.74 0.985323
Target:  5'- -aUAUAUAaCUUAGGUgUUAAAGGGUg -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 76684 0.74 0.98337
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 77184 0.68 0.999901
Target:  5'- -aUAUAUAaUUUAGGUgUUGAAGGGUu -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 78119 0.82 0.74027
Target:  5'- aGUAUAUAGCUUAGaGUUUaUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUC-CAGA-AUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 80097 0.81 0.800983
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 80777 0.95 0.204752
Target:  5'- gGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 81950 0.67 0.999969
Target:  5'- aGUAUAUAGCUUAag---UAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUccagaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 84911 0.69 0.999546
Target:  5'- aGUAUAUAGCUUAaauaUUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUcca-GAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 85095 0.67 0.999984
Target:  5'- ----aAUAGCUUAGGagUUuAGGGGUa -3'
miRNA:   3'- acauaUGUCGAAUCCagAAuUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 85373 0.72 0.996042
Target:  5'- -aUAUAUAGCUUAGauaUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCcagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 86056 0.71 0.99719
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 86485 0.94 0.227677
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 87103 0.8 0.855315
Target:  5'- -uUAUAUAGCUUAGGggUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 87405 0.86 0.554698
Target:  5'- uUGUAUAUAGCUUAGGUa-UGAAGGGg -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgaAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 88325 0.66 0.999996
Target:  5'- -aUAUAUAGCUUAGa---UAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCcagaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 88603 0.87 0.491138
Target:  5'- aGUaaGUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCA--UAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 88866 0.87 0.501514
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 90096 0.67 0.999984
Target:  5'- aGUAUAUAaCUUAaGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUcGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 90584 0.68 0.99987
Target:  5'- uUGUAUA-AGcCUUAGGaUUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUgUC-GAAUCCaGAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.