miRNA display CGI


Results 141 - 160 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 135930 0.76 0.956113
Target:  5'- aGUAUGUAGCUUAGGUgUUAggaucaAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAU------UUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 136001 0.81 0.810543
Target:  5'- ----cAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acauaUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 136087 0.92 0.31735
Target:  5'- uUGUAUAUAGCUUAGGagUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 137662 0.71 0.998385
Target:  5'- aGUAcAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUaUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 137929 0.75 0.973557
Target:  5'- uUGUAUAUAGCUUAaaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 138804 0.95 0.204753
Target:  5'- gUGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 138857 0.7 0.99943
Target:  5'- aGUAUAUAGCUUAaGUgUUAAAGGu- -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 140151 0.69 0.99978
Target:  5'- -uUAUACAGUucagaaaucUUAGGUUUaAGAGGGUu -3'
miRNA:   3'- acAUAUGUCG---------AAUCCAGAaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 140962 0.81 0.781339
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAaGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 142025 0.82 0.74027
Target:  5'- gUGUAUAUAGCUUAGGUgUUAAAaGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 143064 0.74 0.985323
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 143802 0.8 0.829087
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAGaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 144059 0.71 0.99719
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAc--- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 144190 0.75 0.967318
Target:  5'- uUGUAUAUAGUUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 145072 0.92 0.301984
Target:  5'- gUGUAUAUAGCUUAGGUaUUAAAGGGUg -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 145976 0.73 0.992595
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 146763 0.81 0.819915
Target:  5'- aGUAUAUacauGGUUUAGGUgUUAGAGGGUa -3'
miRNA:   3'- aCAUAUG----UCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 146943 0.8 0.846797
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 148162 0.71 0.99719
Target:  5'- cUGUaaGUGCAGCgaaugcUAGGaUUUAAAGGGUa -3'
miRNA:   3'- -ACA--UAUGUCGa-----AUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 149241 0.66 0.999992
Target:  5'- cUGUGUAUAGCUUAaGUgUUAAAaGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUcCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.