miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 134191 0.81 0.810543
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 131991 0.78 0.914423
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 131171 0.94 0.227677
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 131154 0.91 0.349826
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 131104 0.68 0.999901
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 130973 0.71 0.998385
Target:  5'- -aUAUACAagugaaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUc-----GAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 130911 0.81 0.819914
Target:  5'- uUGUuUAUAGCUUAGGaUUUAAAGGGUa -3'
miRNA:   3'- -ACAuAUGUCGAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 127425 0.86 0.554698
Target:  5'- -aUAUACAGCUUAaGUCUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 125576 0.87 0.501513
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 124519 0.68 0.999901
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 124420 0.81 0.810543
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 123357 0.67 0.999958
Target:  5'- gUGUcaaAUACAGCUuuuuUAGauaGUUUUAAAGGGg -3'
miRNA:   3'- -ACA---UAUGUCGA----AUC---CAGAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 122804 0.88 0.440863
Target:  5'- aGUAUAUAGCUUAGGggUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 118111 0.74 0.981227
Target:  5'- gUGUAUAUAGUUagGGGUC--AAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAa-UCCAGaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 117106 0.68 0.999925
Target:  5'- uUGUAUAUAGCUUAaGUgUUAAAaGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 116855 0.71 0.99719
Target:  5'- cUGUucAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACA--UAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 116672 0.66 0.999992
Target:  5'- --cAUAUAGUUUAGGUgUUAAAcGGUa -3'
miRNA:   3'- acaUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 114842 0.72 0.994535
Target:  5'- uUGUAUAUAGCUUaaguguuaaaaAGGU--UAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAA-----------UCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 114438 0.85 0.598396
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 110217 0.72 0.995338
Target:  5'- aGUAUAUAuaaUUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUc--GAAUCCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.