miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 110137 0.81 0.781339
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 109956 0.96 0.183855
Target:  5'- -aUAUAUAGCUUAGGUCUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 105306 0.8 0.846797
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 104866 0.81 0.800983
Target:  5'- -aUAUAUAGCUUAGGUagguaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAg----AAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 104205 0.88 0.450689
Target:  5'- -uUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 101107 0.73 0.991438
Target:  5'- uUGUAUAUuGCUUAaGUgUUAAAGGGUg -3'
miRNA:   3'- -ACAUAUGuCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 100700 0.81 0.810543
Target:  5'- uUGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 100425 0.67 0.999958
Target:  5'- aGUAUAUAGCUUaAGGg-UUAAAGGa- -3'
miRNA:   3'- aCAUAUGUCGAA-UCCagAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 100136 0.71 0.99719
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 99650 0.81 0.791244
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 97476 0.81 0.810543
Target:  5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 96037 0.74 0.985323
Target:  5'- -aUAUAUAaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 95982 0.7 0.998915
Target:  5'- uUGUAUAUAaCUUAGGUgUU-AAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAuUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 94182 0.95 0.204753
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 94033 0.71 0.998385
Target:  5'- -aUAUAUAGCUUAGGUauuuaaaaagUUAAAGGGc -3'
miRNA:   3'- acAUAUGUCGAAUCCAg---------AAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 92201 0.76 0.951859
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAuGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 90584 0.68 0.99987
Target:  5'- uUGUAUA-AGcCUUAGGaUUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUgUC-GAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 90096 0.67 0.999984
Target:  5'- aGUAUAUAaCUUAaGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUcGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 88866 0.87 0.501514
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 88603 0.87 0.491138
Target:  5'- aGUaaGUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCA--UAUGUCGAAUCCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.