Results 121 - 140 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 72257 | 0.74 | 0.985323 |
Target: 5'- -aUAUAUAGCUUAGuUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 71687 | 0.73 | 0.990143 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAGAa--- -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUccca -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 71498 | 0.77 | 0.942544 |
Target: 5'- -uUAUAUAGCcUAGGUgUUAAAGGGg -3' miRNA: 3'- acAUAUGUCGaAUCCAgAAUUUCCCa -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 69409 | 0.73 | 0.991438 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAa--- -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUccca -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 69211 | 0.67 | 0.999958 |
Target: 5'- gUGUAUAUAaCUUAGaUgUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUcGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 69159 | 0.71 | 0.997651 |
Target: 5'- -uUGUAUAGuCUUAGGaaUUAAAGGGUu -3' miRNA: 3'- acAUAUGUC-GAAUCCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 68311 | 0.71 | 0.998672 |
Target: 5'- uUGcAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- -ACaUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 68110 | 0.66 | 0.999992 |
Target: 5'- --cAUAUAaCUUAGGUggUAGAGGGUa -3' miRNA: 3'- acaUAUGUcGAAUCCAgaAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 67748 | 0.66 | 0.999997 |
Target: 5'- aGUAUAUAGCUUAaGUgUUAAAaGGUu -3' miRNA: 3'- aCAUAUGUCGAAUcCAgAAUUUcCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 67392 | 0.67 | 0.999989 |
Target: 5'- gUGUAUAUAGCUUAaGUgUUAAAaGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUcCAgAAUUUcCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 67032 | 0.91 | 0.349826 |
Target: 5'- aGUAUAUAGCUUAGGagUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 65798 | 0.76 | 0.956113 |
Target: 5'- --cAUAUAGCUcAGGUgUUAAAGGGUu -3' miRNA: 3'- acaUAUGUCGAaUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 65669 | 0.66 | 0.999992 |
Target: 5'- aGUAUA-AGcCUUAGGaUUUAAAGGGg -3' miRNA: 3'- aCAUAUgUC-GAAUCCaGAAUUUCCCa -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 63398 | 0.74 | 0.987096 |
Target: 5'- uUGUAUAUAGCUUAGaUgUUAAAGaGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCcAgAAUUUC-CCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 63270 | 0.68 | 0.99987 |
Target: 5'- aUGUucAUAUAGCUUaaAGGU--UAAAGGGUu -3' miRNA: 3'- -ACA--UAUGUCGAA--UCCAgaAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 57268 | 0.96 | 0.194058 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 55157 | 0.77 | 0.947338 |
Target: 5'- gUGUAUAUAGCUUGaGagUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUcCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 55098 | 0.69 | 0.99978 |
Target: 5'- aGUAUA-AGCuUUAGGaUUUAAAGGGUa -3' miRNA: 3'- aCAUAUgUCG-AAUCCaGAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 54378 | 0.87 | 0.501513 |
Target: 5'- -aUGUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 52366 | 0.81 | 0.791244 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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