miRNA display CGI


Results 81 - 100 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 76246 0.74 0.985323
Target:  5'- -aUAUAUAaCUUAGGUgUUAAAGGGUg -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 74813 0.73 0.992595
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 114842 0.72 0.994535
Target:  5'- uUGUAUAUAGCUUaaguguuaaaaAGGU--UAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAA-----------UCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 170619 0.72 0.996656
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 86056 0.71 0.99719
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 50229 0.71 0.998672
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGa-- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 68311 0.71 0.998672
Target:  5'- uUGcAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- -ACaUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 87103 0.8 0.855315
Target:  5'- -uUAUAUAGCUUAGGggUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 167185 0.8 0.829087
Target:  5'- cGUAUAUAGCUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 97476 0.81 0.810543
Target:  5'- uUGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 131104 0.68 0.999901
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 123357 0.67 0.999958
Target:  5'- gUGUcaaAUACAGCUuuuuUAGauaGUUUUAAAGGGg -3'
miRNA:   3'- -ACA---UAUGUCGA----AUC---CAGAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 48419 0.67 0.999984
Target:  5'- uUGUAUAUA-CUUAGGU---AAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 68110 0.66 0.999992
Target:  5'- --cAUAUAaCUUAGGUggUAGAGGGUa -3'
miRNA:   3'- acaUAUGUcGAAUCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 7677 0.66 0.999994
Target:  5'- uUGUAUAUAGCUUAGGUagagUAAAa--- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAga--AUUUccca -5'
28250 5' -45.3 NC_005902.1 + 54378 0.87 0.501513
Target:  5'- -aUGUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 127425 0.86 0.554698
Target:  5'- -aUAUACAGCUUAaGUCUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 78119 0.82 0.74027
Target:  5'- aGUAUAUAGCUUAGaGUUUaUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUC-CAGA-AUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 52366 0.81 0.791244
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 23506 0.81 0.800983
Target:  5'- uUGUAUAUAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.