miRNA display CGI


Results 101 - 120 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 162754 0.73 0.990143
Target:  5'- -aUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 5690 0.71 0.99719
Target:  5'- uUGUAUAUAGCUUAGGggUUAAAGa-- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCagAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 69159 0.71 0.997651
Target:  5'- -uUGUAUAGuCUUAGGaaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUC-GAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 96037 0.74 0.985323
Target:  5'- -aUAUAUAaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 105306 0.8 0.846797
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 151227 0.8 0.846797
Target:  5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 40095 0.8 0.846797
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 81950 0.67 0.999969
Target:  5'- aGUAUAUAGCUUAag---UAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUccagaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 16600 0.77 0.937476
Target:  5'- -aUAUACAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 19913 0.78 0.914423
Target:  5'- aUGUAUAUAGCUUAaGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 43022 0.8 0.846797
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 131991 0.78 0.914423
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 162576 0.77 0.942544
Target:  5'- aGUAUAUAGaUUAGGUgUUAAAGGGc -3'
miRNA:   3'- aCAUAUGUCgAAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 77184 0.68 0.999901
Target:  5'- -aUAUAUAaUUUAGGUgUUGAAGGGUu -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 173498 0.71 0.99719
Target:  5'- uUGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 100136 0.71 0.99719
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 144059 0.71 0.99719
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAc--- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 164874 0.71 0.997651
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 146943 0.8 0.846797
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 49473 0.8 0.846797
Target:  5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.