miRNA display CGI


Results 121 - 140 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 159783 0.7 0.998915
Target:  5'- aGUAUAUAGCUaAGua-UUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAaUCcagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 162576 0.77 0.942544
Target:  5'- aGUAUAUAGaUUAGGUgUUAAAGGGc -3'
miRNA:   3'- aCAUAUGUCgAAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 135930 0.76 0.956113
Target:  5'- aGUAUGUAGCUUAGGUgUUAggaucaAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAU------UUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 94182 0.95 0.204753
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 57268 0.96 0.194058
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 184894 1.09 0.037077
Target:  5'- uUGUAUACAGCUUAGGUCUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 169167 0.76 0.963836
Target:  5'- --gAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- acaUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 15191 0.75 0.967318
Target:  5'- uUGUAUAUAGCUUAcaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 39612 0.75 0.973557
Target:  5'- aGUGaauUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- aCAU---AUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 75130 0.76 0.951859
Target:  5'- -aUAUAUAGCUUAGGUauaAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 178441 0.77 0.947338
Target:  5'- aGUAUAUAaUUUAGGUgUUAAAGGGUg -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 55157 0.77 0.947338
Target:  5'- gUGUAUAUAGCUUGaGagUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 157064 0.71 0.998673
Target:  5'- uUGUGUAUAGCUUAGGUgUUAAc---- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUuccca -5'
28250 5' -45.3 NC_005902.1 + 137662 0.71 0.998385
Target:  5'- aGUAcAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUaUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 94033 0.71 0.998385
Target:  5'- -aUAUAUAGCUUAGGUauuuaaaaagUUAAAGGGc -3'
miRNA:   3'- acAUAUGUCGAAUCCAg---------AAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 130973 0.71 0.998385
Target:  5'- -aUAUACAagugaaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUc-----GAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 164874 0.71 0.997651
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 144059 0.71 0.99719
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAc--- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 100136 0.71 0.99719
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 173498 0.71 0.99719
Target:  5'- uUGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.