Results 141 - 160 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 131171 | 0.94 | 0.227677 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 86485 | 0.94 | 0.227677 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 138804 | 0.95 | 0.204753 |
Target: 5'- gUGUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 94182 | 0.95 | 0.204753 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 57268 | 0.96 | 0.194058 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 184894 | 1.09 | 0.037077 |
Target: 5'- uUGUAUACAGCUUAGGUCUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAGAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 88603 | 0.87 | 0.491138 |
Target: 5'- aGUaaGUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCA--UAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 40095 | 0.8 | 0.846797 |
Target: 5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 135930 | 0.76 | 0.956113 |
Target: 5'- aGUAUGUAGCUUAGGUgUUAggaucaAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAU------UUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 75130 | 0.76 | 0.951859 |
Target: 5'- -aUAUAUAGCUUAGGUauaAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgaaUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 178441 | 0.77 | 0.947338 |
Target: 5'- aGUAUAUAaUUUAGGUgUUAAAGGGUg -3' miRNA: 3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 55157 | 0.77 | 0.947338 |
Target: 5'- gUGUAUAUAGCUUGaGagUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUcCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 162576 | 0.77 | 0.942544 |
Target: 5'- aGUAUAUAGaUUAGGUgUUAAAGGGc -3' miRNA: 3'- aCAUAUGUCgAAUCCAgAAUUUCCCa -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 16600 | 0.77 | 0.937476 |
Target: 5'- -aUAUACAGCUUAaGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 131991 | 0.78 | 0.914423 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGa- -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCca -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 19913 | 0.78 | 0.914423 |
Target: 5'- aUGUAUAUAGCUUAaGUaUUAAAGGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 151227 | 0.8 | 0.846797 |
Target: 5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 146943 | 0.8 | 0.846797 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 105306 | 0.8 | 0.846797 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 43022 | 0.8 | 0.846797 |
Target: 5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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