miRNA display CGI


Results 161 - 180 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 57268 0.96 0.194058
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 178441 0.77 0.947338
Target:  5'- aGUAUAUAaUUUAGGUgUUAAAGGGUg -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 75130 0.76 0.951859
Target:  5'- -aUAUAUAGCUUAGGUauaAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgaaUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 135930 0.76 0.956113
Target:  5'- aGUAUGUAGCUUAGGUgUUAggaucaAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAU------UUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 169167 0.76 0.963836
Target:  5'- --gAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- acaUAUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 15191 0.75 0.967318
Target:  5'- uUGUAUAUAGCUUAcaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 39612 0.75 0.973557
Target:  5'- aGUGaauUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- aCAU---AUGUCGAAUCCAgAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 12862 0.75 0.973557
Target:  5'- gUGUAUAUAaCUUAGGagUUAAGGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 137929 0.75 0.973557
Target:  5'- uUGUAUAUAGCUUAaaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 55157 0.77 0.947338
Target:  5'- gUGUAUAUAGCUUGaGagUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 162576 0.77 0.942544
Target:  5'- aGUAUAUAGaUUAGGUgUUAAAGGGc -3'
miRNA:   3'- aCAUAUGUCgAAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 16600 0.77 0.937476
Target:  5'- -aUAUACAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 40095 0.8 0.846797
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 43022 0.8 0.846797
Target:  5'- aGUAUAUAGCUUAGaUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 49473 0.8 0.846797
Target:  5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 105306 0.8 0.846797
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 146943 0.8 0.846797
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 151227 0.8 0.846797
Target:  5'- aGUAUAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 19913 0.78 0.914423
Target:  5'- aUGUAUAUAGCUUAaGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 131991 0.78 0.914423
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.