miRNA display CGI


Results 81 - 100 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 180393 0.73 0.993624
Target:  5'- aGUAUAUAGCUUAauUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 29255 0.72 0.995338
Target:  5'- aGUAUAUAGCUUAGGUgUU--AGGa- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAuuUCCca -5'
28250 5' -45.3 NC_005902.1 + 137662 0.71 0.998385
Target:  5'- aGUAcAUAaCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUaUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 94033 0.71 0.998385
Target:  5'- -aUAUAUAGCUUAGGUauuuaaaaagUUAAAGGGc -3'
miRNA:   3'- acAUAUGUCGAAUCCAg---------AAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 130973 0.71 0.998385
Target:  5'- -aUAUACAagugaaCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUc-----GAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 164874 0.71 0.997651
Target:  5'- -aUAUAUAGCUUAaGUgUUAAAGGGa -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 144059 0.71 0.99719
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAc--- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 100136 0.71 0.99719
Target:  5'- -aUAUAUAGCUUAGaUgUUAAAGGGg -3'
miRNA:   3'- acAUAUGUCGAAUCcAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 173498 0.71 0.99719
Target:  5'- uUGUAUAUAaUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 22594 0.72 0.996656
Target:  5'- -uUAUAUAGcCUUAGGaUUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUC-GAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 15341 0.72 0.996656
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 110217 0.72 0.995338
Target:  5'- aGUAUAUAuaaUUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUc--GAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 1180 0.91 0.325252
Target:  5'- -aUAUACAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 136087 0.92 0.31735
Target:  5'- uUGUAUAUAGCUUAGGagUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 154624 0.92 0.301984
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 80777 0.95 0.204752
Target:  5'- gGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 28812 0.95 0.204752
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 42267 0.96 0.194058
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 20153 0.96 0.188896
Target:  5'- cGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 67748 0.66 0.999997
Target:  5'- aGUAUAUAGCUUAaGUgUUAAAaGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUcCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.