miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 184894 1.09 0.037077
Target:  5'- uUGUAUACAGCUUAGGUCUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 109956 0.96 0.183855
Target:  5'- -aUAUAUAGCUUAGGUCUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 20153 0.96 0.188896
Target:  5'- cGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 57268 0.96 0.194058
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 42267 0.96 0.194058
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 80777 0.95 0.204752
Target:  5'- gGUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 28812 0.95 0.204752
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 138804 0.95 0.204753
Target:  5'- gUGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 94182 0.95 0.204753
Target:  5'- uUGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 131171 0.94 0.227677
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 86485 0.94 0.227677
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 76123 0.94 0.233737
Target:  5'- uUGcAUAUAGCUUAGGUCUUAAAGGGUu -3'
miRNA:   3'- -ACaUAUGUCGAAUCCAGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 172858 0.94 0.239933
Target:  5'- gGUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 18886 0.93 0.272986
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 154624 0.92 0.301984
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 145072 0.92 0.301984
Target:  5'- gUGUAUAUAGCUUAGGUaUUAAAGGGUg -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 136087 0.92 0.31735
Target:  5'- uUGUAUAUAGCUUAGGagUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 1180 0.91 0.325252
Target:  5'- -aUAUACAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 67032 0.91 0.349826
Target:  5'- aGUAUAUAGCUUAGGagUUAAAGGGUa -3'
miRNA:   3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 131154 0.91 0.349826
Target:  5'- uUGUAUAUAGCUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.