miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 1180 0.91 0.325252
Target:  5'- -aUAUACAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 3477 0.78 0.901233
Target:  5'- uUGUAUAUAGCUUAGGUgUUAaaaucGAGuGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAgAAU-----UUC-CCA- -5'
28250 5' -45.3 NC_005902.1 + 5089 0.66 0.999994
Target:  5'- ----aACAGCaUGGGU--UAAAGGGUa -3'
miRNA:   3'- acauaUGUCGaAUCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 5422 0.71 0.998672
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGa-- -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 5690 0.71 0.99719
Target:  5'- uUGUAUAUAGCUUAGGggUUAAAGa-- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCagAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 6230 0.8 0.846796
Target:  5'- aGUAUAUAGCUUAGuUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 6346 0.81 0.791244
Target:  5'- -aUAUAUAGCUUAGGUUUUAAAGGa- -3'
miRNA:   3'- acAUAUGUCGAAUCCAGAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 7677 0.66 0.999994
Target:  5'- uUGUAUAUAGCUUAGGUagagUAAAa--- -3'
miRNA:   3'- -ACAUAUGUCGAAUCCAga--AUUUccca -5'
28250 5' -45.3 NC_005902.1 + 10428 0.8 0.829087
Target:  5'- uUGUAUACGGCUUAcGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 11449 0.75 0.978883
Target:  5'- cGUAUAUAGCUUAGGUgUUAAcucGGUc -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUuc-CCA- -5'
28250 5' -45.3 NC_005902.1 + 12862 0.75 0.973557
Target:  5'- gUGUAUAUAaCUUAGGagUUAAGGGGUu -3'
miRNA:   3'- -ACAUAUGUcGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 13226 0.88 0.440863
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUa -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 13436 0.8 0.838051
Target:  5'- aGUAUAUAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 15191 0.75 0.967318
Target:  5'- uUGUAUAUAGCUUAcaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUccAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 15341 0.72 0.996656
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGaGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCcCA- -5'
28250 5' -45.3 NC_005902.1 + 15510 0.67 0.999958
Target:  5'- -aUAUAUAGUUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 16600 0.77 0.937476
Target:  5'- -aUAUACAGCUUAaGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 16919 0.87 0.501513
Target:  5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 18886 0.93 0.272986
Target:  5'- aGUAUAUAGCUUAGGUgUUAAAGGGa -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 19913 0.78 0.914423
Target:  5'- aUGUAUAUAGCUUAaGUaUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.