miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28250 5' -45.3 NC_005902.1 + 81950 0.67 0.999969
Target:  5'- aGUAUAUAGCUUAag---UAAAGGGUu -3'
miRNA:   3'- aCAUAUGUCGAAUccagaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 168402 0.67 0.999958
Target:  5'- aGUAUA-AGcCUUAGGgUUUAAAGGGUu -3'
miRNA:   3'- aCAUAUgUC-GAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 45173 0.67 0.999958
Target:  5'- aGUAUACAGCUUAGaUgUUAAAGa-- -3'
miRNA:   3'- aCAUAUGUCGAAUCcAgAAUUUCcca -5'
28250 5' -45.3 NC_005902.1 + 100425 0.67 0.999958
Target:  5'- aGUAUAUAGCUUaAGGg-UUAAAGGa- -3'
miRNA:   3'- aCAUAUGUCGAA-UCCagAAUUUCCca -5'
28250 5' -45.3 NC_005902.1 + 123357 0.67 0.999958
Target:  5'- gUGUcaaAUACAGCUuuuuUAGauaGUUUUAAAGGGg -3'
miRNA:   3'- -ACA---UAUGUCGA----AUC---CAGAAUUUCCCa -5'
28250 5' -45.3 NC_005902.1 + 173217 0.67 0.999958
Target:  5'- -aUAUAUAaCUUAGGagUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUcGAAUCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 36842 0.67 0.999958
Target:  5'- aGUAUAUAGCUUAGGUaUUAAAa--- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUUUccca -5'
28250 5' -45.3 NC_005902.1 + 15510 0.67 0.999958
Target:  5'- -aUAUAUAGUUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 48611 0.67 0.999958
Target:  5'- -aUAUAUAGUUUAGGUgUUAAAaGGUu -3'
miRNA:   3'- acAUAUGUCGAAUCCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 69211 0.67 0.999958
Target:  5'- gUGUAUAUAaCUUAGaUgUUAAAGGGUa -3'
miRNA:   3'- -ACAUAUGUcGAAUCcAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 117106 0.68 0.999925
Target:  5'- uUGUAUAUAGCUUAaGUgUUAAAaGGUa -3'
miRNA:   3'- -ACAUAUGUCGAAUcCAgAAUUUcCCA- -5'
28250 5' -45.3 NC_005902.1 + 131104 0.68 0.999901
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 77184 0.68 0.999901
Target:  5'- -aUAUAUAaUUUAGGUgUUGAAGGGUu -3'
miRNA:   3'- acAUAUGUcGAAUCCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 124519 0.68 0.999901
Target:  5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3'
miRNA:   3'- acAUAUGUCGAAUcCAgAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 45121 0.68 0.999901
Target:  5'- cGUAUAUAGCUUAGGUgUUAu----- -3'
miRNA:   3'- aCAUAUGUCGAAUCCAgAAUuuccca -5'
28250 5' -45.3 NC_005902.1 + 90584 0.68 0.99987
Target:  5'- uUGUAUA-AGcCUUAGGaUUUAAAGGGUu -3'
miRNA:   3'- -ACAUAUgUC-GAAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 154877 0.68 0.99987
Target:  5'- aUGUGUuguCAGCauguagAGGagUUAAAGGGUa -3'
miRNA:   3'- -ACAUAu--GUCGaa----UCCagAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 63270 0.68 0.99987
Target:  5'- aUGUucAUAUAGCUUaaAGGU--UAAAGGGUu -3'
miRNA:   3'- -ACA--UAUGUCGAA--UCCAgaAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 157113 0.69 0.99978
Target:  5'- aGUAUA-AGCuUUAGGaUUUAAAGGGUa -3'
miRNA:   3'- aCAUAUgUCG-AAUCCaGAAUUUCCCA- -5'
28250 5' -45.3 NC_005902.1 + 140151 0.69 0.99978
Target:  5'- -uUAUACAGUucagaaaucUUAGGUUUaAGAGGGUu -3'
miRNA:   3'- acAUAUGUCG---------AAUCCAGAaUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.