miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 37756 0.66 1
Target:  5'- uAAAGGGUauuuaucuuuUAACACcUAAGCUugcuaugcuuauuuGUAUAUa -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGA--------------UAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 162007 0.66 1
Target:  5'- uAAAGGGUauucaucuuuUAAUAUUUAAGC-AUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGaUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 71212 0.66 1
Target:  5'- -----uUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 8175 0.66 1
Target:  5'- ------cUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccaAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 58382 0.66 1
Target:  5'- uAAAGGGUUGAUACcUAAaCUAUAc-- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUcGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 94268 0.66 1
Target:  5'- aGAAGGGaaaacauaUUAACAUUUAAGUUaAUAUGc -3'
miRNA:   3'- -UUUCCC--------AAUUGUGAAUUCGA-UAUAUa -5'
28251 3' -40.9 NC_005902.1 + 50203 0.66 1
Target:  5'- ---aGGUauaacccuuUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- uuucCCA---------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 162756 0.66 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUGc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 182926 0.66 1
Target:  5'- --cGGaGUuaauuuUAACACcUAAGCUAUAUAUg -3'
miRNA:   3'- uuuCC-CA------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 10120 0.66 1
Target:  5'- uAAAGGGUUAAUAUcUAAauuuGCUAUAUu- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUU----CGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 48563 0.66 1
Target:  5'- uAAAGGGUUAAUACcUAAaCUAUAc-- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUcGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 39156 0.66 1
Target:  5'- aAGGGGGUguaAAUGCUUGAGUUAa---- -3'
miRNA:   3'- -UUUCCCAa--UUGUGAAUUCGAUauaua -5'
28251 3' -40.9 NC_005902.1 + 18847 0.66 1
Target:  5'- -uAGGaGUuaaccuuuUAACACcUAAGCUAUAUAc -3'
miRNA:   3'- uuUCC-CA--------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 118995 0.67 1
Target:  5'- uAAAGGGUaaaauacccuuUAACuCcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA-----------AUUGuGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 120307 0.67 1
Target:  5'- uAAAGGaUUAAUACUU-AGUUAUAUAUa -3'
miRNA:   3'- -UUUCCcAAUUGUGAAuUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 135895 0.67 1
Target:  5'- -----uUUAACAUUUAAGCUAUGUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 134582 0.67 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 15531 0.67 1
Target:  5'- ---aGGUUAAUACUUAAuCUAUAUAUu -3'
miRNA:   3'- uuucCCAAUUGUGAAUUcGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 40958 0.67 1
Target:  5'- --uGGGUauucacccuuUAAUACcUAAGCUAUAUAc -3'
miRNA:   3'- uuuCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 46923 0.67 1
Target:  5'- uAAAGGauuuaaccuGUUAAUACcUAAGCUAUAUGc -3'
miRNA:   3'- -UUUCC---------CAAUUGUGaAUUCGAUAUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.