Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28251 | 3' | -40.9 | NC_005902.1 | + | 18847 | 0.66 | 1 |
Target: 5'- -uAGGaGUuaaccuuuUAACACcUAAGCUAUAUAc -3' miRNA: 3'- uuUCC-CA--------AUUGUGaAUUCGAUAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 162007 | 0.66 | 1 |
Target: 5'- uAAAGGGUauucaucuuuUAAUAUUUAAGC-AUAUAc -3' miRNA: 3'- -UUUCCCA----------AUUGUGAAUUCGaUAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 50203 | 0.66 | 1 |
Target: 5'- ---aGGUauaacccuuUAACACcUAAGCUAUAUAUa -3' miRNA: 3'- uuucCCA---------AUUGUGaAUUCGAUAUAUA- -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 71212 | 0.66 | 1 |
Target: 5'- -----uUUAAUGCUUAAGCUAUAUAc -3' miRNA: 3'- uuucccAAUUGUGAAUUCGAUAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 8175 | 0.66 | 1 |
Target: 5'- ------cUAACAUUUAAGCUAUAUAc -3' miRNA: 3'- uuucccaAUUGUGAAUUCGAUAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 58382 | 0.66 | 1 |
Target: 5'- uAAAGGGUUGAUACcUAAaCUAUAc-- -3' miRNA: 3'- -UUUCCCAAUUGUGaAUUcGAUAUaua -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 162756 | 0.66 | 1 |
Target: 5'- -----uUUAACAUUUAAGCUAUAUGc -3' miRNA: 3'- uuucccAAUUGUGAAUUCGAUAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 182926 | 0.66 | 1 |
Target: 5'- --cGGaGUuaauuuUAACACcUAAGCUAUAUAUg -3' miRNA: 3'- uuuCC-CA------AUUGUGaAUUCGAUAUAUA- -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 10120 | 0.66 | 1 |
Target: 5'- uAAAGGGUUAAUAUcUAAauuuGCUAUAUu- -3' miRNA: 3'- -UUUCCCAAUUGUGaAUU----CGAUAUAua -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 48563 | 0.66 | 1 |
Target: 5'- uAAAGGGUUAAUACcUAAaCUAUAc-- -3' miRNA: 3'- -UUUCCCAAUUGUGaAUUcGAUAUaua -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 39156 | 0.66 | 1 |
Target: 5'- aAGGGGGUguaAAUGCUUGAGUUAa---- -3' miRNA: 3'- -UUUCCCAa--UUGUGAAUUCGAUauaua -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 37756 | 0.66 | 1 |
Target: 5'- uAAAGGGUauuuaucuuuUAACACcUAAGCUugcuaugcuuauuuGUAUAUa -3' miRNA: 3'- -UUUCCCA----------AUUGUGaAUUCGA--------------UAUAUA- -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 94268 | 0.66 | 1 |
Target: 5'- aGAAGGGaaaacauaUUAACAUUUAAGUUaAUAUGc -3' miRNA: 3'- -UUUCCC--------AAUUGUGAAUUCGA-UAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 40958 | 0.67 | 1 |
Target: 5'- --uGGGUauucacccuuUAAUACcUAAGCUAUAUAc -3' miRNA: 3'- uuuCCCA----------AUUGUGaAUUCGAUAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 141998 | 0.67 | 1 |
Target: 5'- -----uUUAACAUUUAAGCUAUAUAc -3' miRNA: 3'- uuucccAAUUGUGAAUUCGAUAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 15531 | 0.67 | 1 |
Target: 5'- ---aGGUUAAUACUUAAuCUAUAUAUu -3' miRNA: 3'- uuucCCAAUUGUGAAUUcGAUAUAUA- -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 134582 | 0.67 | 1 |
Target: 5'- -----uUUAACAUUUAAGCUAUAUAc -3' miRNA: 3'- uuucccAAUUGUGAAUUCGAUAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 135895 | 0.67 | 1 |
Target: 5'- -----uUUAACAUUUAAGCUAUGUAc -3' miRNA: 3'- uuucccAAUUGUGAAUUCGAUAUAUa -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 165705 | 0.67 | 1 |
Target: 5'- aAAAGGuauuuaucuaUUAACACcUAAGCUAUAUAUa -3' miRNA: 3'- -UUUCCc---------AAUUGUGaAUUCGAUAUAUA- -5' |
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28251 | 3' | -40.9 | NC_005902.1 | + | 118995 | 0.67 | 1 |
Target: 5'- uAAAGGGUaaaauacccuuUAACuCcUAAGCUAUAUAc -3' miRNA: 3'- -UUUCCCA-----------AUUGuGaAUUCGAUAUAUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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