miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 87120 0.95 0.435829
Target:  5'- uAAAGGGUUAAUAUUUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 23306 0.81 0.961818
Target:  5'- uAAAGGGaUAACAUcUAAGCUAUAUGUa -3'
miRNA:   3'- -UUUCCCaAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 58213 0.79 0.986989
Target:  5'- uAAAGGGUaaauacucuuUAACACaUAAGCUAUAUAg -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 50203 0.66 1
Target:  5'- ---aGGUauaacccuuUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- uuucCCA---------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 184577 0.88 0.728486
Target:  5'- uAAAGGGUacuuaugcuuUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 27877 0.88 0.750667
Target:  5'- uAAAGGGUUAAUGCcUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 165933 0.86 0.823346
Target:  5'- uAAAGGGUaaacaccuuuUAAUACUUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 166115 0.85 0.877081
Target:  5'- uGAAGGGUaaauacccuuUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 104887 0.84 0.90025
Target:  5'- uAAAGGGUUAAUcCUUAAGUUAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGuGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 96001 0.82 0.953348
Target:  5'- uAAGGGUUAACACUUAAaUUAUAUAUa -3'
miRNA:   3'- uUUCCCAAUUGUGAAUUcGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 95932 0.83 0.938414
Target:  5'- uAAAGGGUaaauacccuuUAACACUUAAGUUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 114799 0.84 0.892821
Target:  5'- uAAAGGGUauuuacccuuUAACACUUAGGUUAUAUAUg -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 169547 0.92 0.578469
Target:  5'- -cAGGGUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- uuUCCCAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 65688 0.82 0.948672
Target:  5'- aAAGGGGUUAAUACUUAAaCUAUAUAa -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUcGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 81279 0.89 0.694441
Target:  5'- uAAAGGGUUAACAUcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 51418 0.85 0.885096
Target:  5'- uAAAGGGUUAAUAUcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 6248 0.82 0.953348
Target:  5'- uAAAGGGUUAACACcgAAGCcAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaaUUCGaUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 90603 0.79 0.985104
Target:  5'- uAAAGGGUUAACACcUAAGCUugcugauuguucAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGA------------UAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 28831 0.89 0.705875
Target:  5'- uAAAGGGUUAAUACcUAAGCUAUAUAUu -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 1197 0.87 0.803521
Target:  5'- uAAAGGGUUAACACcUAAGUUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.