miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 142265 0.74 0.999836
Target:  5'- aAAAGGGUUaAACACcUAuGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAA-UUGUGaAUuCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 141998 0.67 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 140056 0.69 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAUu -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 139691 0.73 0.999963
Target:  5'- uAAAGaGUUAAUACcUAGGCUAUAUAUa -3'
miRNA:   3'- -UUUCcCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 137894 0.92 0.578469
Target:  5'- uAAAGGGUUAACAUcUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 137739 0.91 0.613234
Target:  5'- uAAAGGGUauuuacccuuUAACACUUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 135954 0.88 0.739637
Target:  5'- cAAAGGGUUAAUACcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 135895 0.67 1
Target:  5'- -----uUUAACAUUUAAGCUAUGUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 135801 0.73 0.999963
Target:  5'- cAGAGGaGUuagcucuuUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCC-CA--------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 134582 0.67 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 134314 0.7 1
Target:  5'- uAAGGGGUauuuacccuuUAACAUUUAAGC-AUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUCGaUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 133618 1.03 0.187653
Target:  5'- uAAAGGGUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 127612 0.67 1
Target:  5'- ----uGUUAAUGCUUAAGCUAUGUu- -3'
miRNA:   3'- uuuccCAAUUGUGAAUUCGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 127458 0.79 0.986989
Target:  5'- uAAAGGGUaaauacucuuUAACACaUAAGCUAUAUAg -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 125544 0.76 0.998845
Target:  5'- ----aGUUAACAUUUAAGCUAUAUAUa -3'
miRNA:   3'- uuuccCAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 121611 0.72 0.999973
Target:  5'- uGAAGGGUUAAUAUUUAaauuauauacAGCUAaGUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGAAU----------UCGAUaUAUA- -5'
28251 3' -40.9 NC_005902.1 + 120307 0.67 1
Target:  5'- uAAAGGaUUAAUACUU-AGUUAUAUAUa -3'
miRNA:   3'- -UUUCCcAAUUGUGAAuUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 118995 0.67 1
Target:  5'- uAAAGGGUaaaauacccuuUAACuCcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA-----------AUUGuGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 118635 0.73 0.999901
Target:  5'- uAAAGGauauuuaaccuuUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCc-----------AAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 118280 0.73 0.999901
Target:  5'- uAAAGGauauuuaaccuuUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCc-----------AAUUGUGAAUUCGAUAUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.