miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 71660 0.69 1
Target:  5'- -----uUUAACACUUAAGUUAUAUAUg -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 75890 0.74 0.999836
Target:  5'- uAAAGGGUauuuauccuuUAAUACcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 75956 0.75 0.999411
Target:  5'- -uAGGGUUAACcCUuuauaUAAGCUAUAUAc -3'
miRNA:   3'- uuUCCCAAUUGuGA-----AUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 75995 0.74 0.999836
Target:  5'- uAAAGGGUUAACAUcUAAGCcAUAUu- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGaUAUAua -5'
28251 3' -40.9 NC_005902.1 + 76206 0.68 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 76775 0.69 1
Target:  5'- uAAAGGauu-ACAUUUAGGCUAUAUAc -3'
miRNA:   3'- -UUUCCcaauUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 77086 0.75 0.999411
Target:  5'- -uAGGGUagaauaaugcUAACACUUAAGCuUAUAUAc -3'
miRNA:   3'- uuUCCCA----------AUUGUGAAUUCG-AUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 81279 0.89 0.694441
Target:  5'- uAAAGGGUUAACAUcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 84930 0.71 0.999997
Target:  5'- uAAAGGGUUAAUAUcUAAaCUAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUcGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 85604 0.77 0.995569
Target:  5'- cAGAGGGUauucauccuuUAACcCUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGuGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 86020 0.72 0.999981
Target:  5'- uAAAGGaUUAACACcUAAGCUAUAUu- -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 86446 0.73 0.999949
Target:  5'- -----uUUAACACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 87120 0.95 0.435829
Target:  5'- uAAAGGGUUAAUAUUUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 87357 0.74 0.999719
Target:  5'- uAAAGGcUUAAUACcUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 88292 0.76 0.998845
Target:  5'- uAAAGGaUUAACACcUAAGCUAUAUGc -3'
miRNA:   3'- -UUUCCcAAUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 90186 0.91 0.624873
Target:  5'- uAGAGGGUUAAUACaUAAGCUAUAUAUg -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 90603 0.79 0.985104
Target:  5'- uAAGGGGUaaAACACcUAAGCUGUAUAUg -3'
miRNA:   3'- -UUUCCCAa-UUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 90603 0.79 0.985104
Target:  5'- uAAAGGGUUAACACcUAAGCUugcugauuguucAUAUAUa -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUCGA------------UAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 91107 0.69 1
Target:  5'- uAAAGGGUaAAUACccuuugucUAAGCUAUAUAg -3'
miRNA:   3'- -UUUCCCAaUUGUGa-------AUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 91296 0.72 0.999987
Target:  5'- aAAGGGGUaaauaccuuuUAACACUUAAaCUAUAUAc -3'
miRNA:   3'- -UUUCCCA----------AUUGUGAAUUcGAUAUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.