miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 5' -45.7 NC_005902.1 + 157064 0.85 0.524855
Target:  5'- uUGUGUAUAGCUUAGGUGUuAACaCCUa -3'
miRNA:   3'- cAUACAUAUCGAAUCCACA-UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 157211 0.7 0.998854
Target:  5'- ----aUAUAGCUUAGGUauUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAc-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 157890 0.7 0.99786
Target:  5'- ----aUAUAGCUUAGGUGUuaaaagauaaauACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 158165 0.67 0.999895
Target:  5'- ----aUAUAGCUUAGGcauUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCac-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 162432 0.76 0.939157
Target:  5'- uGUGUGUAUAGCUUAGGUGUuaaagaguaaauACUUUUu -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 162630 0.8 0.795097
Target:  5'- uUGUaUAUAGCUUGGGUGuUAACCCUUu -3'
miRNA:   3'- cAUAcAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 163430 0.79 0.823742
Target:  5'- ----aUAUAGCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cauacAUAUCGAAUCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 167185 0.66 0.999968
Target:  5'- cGUA--UAUAGCUUAGGUGUuaaaagguuAACuCCUa -3'
miRNA:   3'- -CAUacAUAUCGAAUCCACA---------UUG-GGAa -5'
28251 5' -45.7 NC_005902.1 + 169577 0.66 0.999987
Target:  5'- -aGUGUAUAGUUUAGGUGUuaaaagguaaauACUUUUu -3'
miRNA:   3'- caUACAUAUCGAAUCCACAu-----------UGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 170617 0.75 0.949818
Target:  5'- uUAUaUAUAGCUUAGGUGUuaaagaguuaAACCCUa -3'
miRNA:   3'- cAUAcAUAUCGAAUCCACA----------UUGGGAa -5'
28251 5' -45.7 NC_005902.1 + 179788 0.73 0.980324
Target:  5'- uGUAUaUAUGGCUUcGGUGuUAACCCUUu -3'
miRNA:   3'- -CAUAcAUAUCGAAuCCAC-AUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 182662 1.05 0.046332
Target:  5'- uGUAUGUAUAGCUUAGGUGUAACCCUUu -3'
miRNA:   3'- -CAUACAUAUCGAAUCCACAUUGGGAA- -5'
28251 5' -45.7 NC_005902.1 + 182964 0.69 0.999069
Target:  5'- uGUAUaUAUAGCUUAGGUGUuaAAUCgUUa -3'
miRNA:   3'- -CAUAcAUAUCGAAUCCACA--UUGGgAA- -5'
28251 5' -45.7 NC_005902.1 + 184840 0.7 0.997938
Target:  5'- --uUGUAUAuaaCUUAGGUGuUAACCCUUu -3'
miRNA:   3'- cauACAUAUc--GAAUCCAC-AUUGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.