miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 3' -42.3 NC_005902.1 + 137740 0.66 1
Target:  5'- aAAGGGUauuuacccuuUAAcACUuAAGCUAUAUAUAa -3'
miRNA:   3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 139692 0.66 1
Target:  5'- aAAGaGUUAAUACcuAGGCUAUAUAUAa -3'
miRNA:   3'- -UUCcCAAUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 71212 0.66 1
Target:  5'- ----uUUAAUGCUuAAGCUAUAUACAc -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 184578 0.66 1
Target:  5'- aAAGGGUacuuaugcuuUAAcACUuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 162162 0.66 1
Target:  5'- uAGGGUggAGUAUUGcuuuuAAGUUAUAUACu -3'
miRNA:   3'- uUCCCAa-UUAUGAC-----UUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 165876 0.66 1
Target:  5'- aAAGGGUgAAUACccuuuaacaccuAAGCUAUAUACGa -3'
miRNA:   3'- -UUCCCAaUUAUGac----------UUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 11395 0.66 1
Target:  5'- aAAGGGUauucacucuuUAAcACUuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 144988 0.66 1
Target:  5'- ----uUUAAUACUaAAGCUAUAUACAu -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 100658 0.66 1
Target:  5'- aAAGGGUauuuacccuuUAAUAUcuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 26249 0.66 1
Target:  5'- -uGGGUgaauacccuuUAAUACUu-AGCUAUAUACu -3'
miRNA:   3'- uuCCCA----------AUUAUGAcuUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 41026 0.67 1
Target:  5'- ----uUUAAUACUuAAGCUAUAUACAa -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 143632 0.67 1
Target:  5'- cAGGGUUuaaaagAUUGAcaccuaAGCUAUAUACu -3'
miRNA:   3'- uUCCCAAuua---UGACU------UCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 36945 0.67 1
Target:  5'- cAGGGGUagaguaucucauUAAUACUuuaccuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCA------------AUUAUGAc-----UUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 76206 0.67 1
Target:  5'- ----uUUAAUACUuAAGCUAUAUACAa -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 79292 0.67 1
Target:  5'- aAAGGGUU-------GAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAuuaugacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 11541 0.67 1
Target:  5'- aAAGGGUUA-------AGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 138824 0.67 1
Target:  5'- aAAGGGUUA-------AGCUAUAUGCAa -3'
miRNA:   3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 162803 0.67 1
Target:  5'- aAAGGGUUAAUAUcuAAGCU---UGCAu -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAuauAUGU- -5'
28252 3' -42.3 NC_005902.1 + 5176 0.67 1
Target:  5'- aAAGGGUUAAUAUUuAAGCUuuaaAUAaACAu -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUCGA----UAUaUGU- -5'
28252 3' -42.3 NC_005902.1 + 175756 0.67 1
Target:  5'- aAAGG--UAGUACUccAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCcaAUUAUGAc-UUCGAUAUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.