Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28252 | 3' | -42.3 | NC_005902.1 | + | 179753 | 1.08 | 0.071452 |
Target: 5'- aAAGGGUUAAUACUGAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUAUGACUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 169547 | 0.91 | 0.499472 |
Target: 5'- cAGGGUUAAUGCUuAAGCUAUAUACAu -3' miRNA: 3'- uUCCCAAUUAUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 135955 | 0.88 | 0.656501 |
Target: 5'- aAAGGGUUAAUACcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 133619 | 0.84 | 0.854374 |
Target: 5'- aAAGGGUUAAcACUuAAGCUAUAUACAu -3' miRNA: 3'- -UUCCCAAUUaUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 90187 | 0.82 | 0.894604 |
Target: 5'- aGAGGGUUAAUACauAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 51419 | 0.82 | 0.901818 |
Target: 5'- aAAGGGUUAAUAUcuAAGCUAUAUACu -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 87121 | 0.82 | 0.915374 |
Target: 5'- aAAGGGUUAAUAUUuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUAUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 27878 | 0.82 | 0.92171 |
Target: 5'- aAAGGGUUAAUGCcuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 28832 | 0.8 | 0.953511 |
Target: 5'- aAAGGGUUAAUACcuAAGCUAUAUAUu -3' miRNA: 3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 15477 | 0.8 | 0.953511 |
Target: 5'- --aGGUUAAUGCUuAAGCUAUAUACAu -3' miRNA: 3'- uucCCAAUUAUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 166116 | 0.8 | 0.957796 |
Target: 5'- gAAGGGUaaauacccuuUAAUACUuAAGCUAUAUACAu -3' miRNA: 3'- -UUCCCA----------AUUAUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 23409 | 0.78 | 0.980416 |
Target: 5'- aAAGGGUUAAcACccAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 81280 | 0.77 | 0.992456 |
Target: 5'- aAAGGGUUAAcAUcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 160991 | 0.76 | 0.993533 |
Target: 5'- aAAGGGgUAAUAUcuAAGCUAUAUACAa -3' miRNA: 3'- -UUCCCaAUUAUGacUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 8692 | 0.76 | 0.993533 |
Target: 5'- aAAGGGUUAAcACUuauGCUAUAUACAa -3' miRNA: 3'- -UUCCCAAUUaUGAcuuCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 43849 | 0.76 | 0.994483 |
Target: 5'- aAAGGGUUAuUAUUuAAGCUAUAUACu -3' miRNA: 3'- -UUCCCAAUuAUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 6249 | 0.76 | 0.995317 |
Target: 5'- aAAGGGUUAAcACcGAAGCcaUAUAUACAc -3' miRNA: 3'- -UUCCCAAUUaUGaCUUCG--AUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 110036 | 0.75 | 0.996678 |
Target: 5'- aAAGGGUUAcaACU-AAGCUAUAUACu -3' miRNA: 3'- -UUCCCAAUuaUGAcUUCGAUAUAUGu -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 165934 | 0.75 | 0.997695 |
Target: 5'- aAAGGGUaaacaccuuuUAAUACUuAAGCUAUAUAUAc -3' miRNA: 3'- -UUCCCA----------AUUAUGAcUUCGAUAUAUGU- -5' |
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28252 | 3' | -42.3 | NC_005902.1 | + | 182625 | 0.75 | 0.998096 |
Target: 5'- aAAGGGUUAA-ACUuAAGCUAUAUAUg -3' miRNA: 3'- -UUCCCAAUUaUGAcUUCGAUAUAUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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