miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 3' -42.3 NC_005902.1 + 1198 0.73 0.999674
Target:  5'- aAAGGGUUAAcACcuAAGUUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 5176 0.67 1
Target:  5'- aAAGGGUUAAUAUUuAAGCUuuaaAUAaACAu -3'
miRNA:   3'- -UUCCCAAUUAUGAcUUCGA----UAUaUGU- -5'
28252 3' -42.3 NC_005902.1 + 6249 0.76 0.995317
Target:  5'- aAAGGGUUAAcACcGAAGCcaUAUAUACAc -3'
miRNA:   3'- -UUCCCAAUUaUGaCUUCG--AUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 8692 0.76 0.993533
Target:  5'- aAAGGGUUAAcACUuauGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUaUGAcuuCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 11038 0.72 0.999887
Target:  5'- aAAGGGUUAAcACUuAAGUUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 11395 0.66 1
Target:  5'- aAAGGGUauucacucuuUAAcACUuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCA----------AUUaUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 11541 0.67 1
Target:  5'- aAAGGGUUA-------AGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUuaugacuUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 15477 0.8 0.953511
Target:  5'- --aGGUUAAUGCUuAAGCUAUAUACAu -3'
miRNA:   3'- uucCCAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 22613 0.7 0.999982
Target:  5'- aAAGGGUUAAcACcuAAGCUAUAUAUu -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 23409 0.78 0.980416
Target:  5'- aAAGGGUUAAcACccAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCAAUUaUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 26249 0.66 1
Target:  5'- -uGGGUgaauacccuuUAAUACUu-AGCUAUAUACu -3'
miRNA:   3'- uuCCCA----------AUUAUGAcuUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 27878 0.82 0.92171
Target:  5'- aAAGGGUUAAUGCcuAAGCUAUAUAUg -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 28832 0.8 0.953511
Target:  5'- aAAGGGUUAAUACcuAAGCUAUAUAUu -3'
miRNA:   3'- -UUCCCAAUUAUGacUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 31405 0.74 0.998437
Target:  5'- aAAGGGUauuuacccuuUAAUACcuAAGCUAUAUACAa -3'
miRNA:   3'- -UUCCCA----------AUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 36945 0.67 1
Target:  5'- cAGGGGUagaguaucucauUAAUACUuuaccuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCA------------AUUAUGAc-----UUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 39466 0.69 0.999997
Target:  5'- aAAGGGUUAaaagauuaGUACUGAA-UUAUAUAUAa -3'
miRNA:   3'- -UUCCCAAU--------UAUGACUUcGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 40958 0.69 0.999999
Target:  5'- -uGGGUauucacccuuUAAUACcuAAGCUAUAUACAc -3'
miRNA:   3'- uuCCCA----------AUUAUGacUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 41026 0.67 1
Target:  5'- ----uUUAAUACUuAAGCUAUAUACAa -3'
miRNA:   3'- uucccAAUUAUGAcUUCGAUAUAUGU- -5'
28252 3' -42.3 NC_005902.1 + 43849 0.76 0.994483
Target:  5'- aAAGGGUUAuUAUUuAAGCUAUAUACu -3'
miRNA:   3'- -UUCCCAAUuAUGAcUUCGAUAUAUGu -5'
28252 3' -42.3 NC_005902.1 + 45317 0.7 0.999994
Target:  5'- -uGGGUUAAaAUUuAAGCUAUAUACu -3'
miRNA:   3'- uuCCCAAUUaUGAcUUCGAUAUAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.