miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28252 5' -44.4 NC_005902.1 + 179787 1.15 0.023696
Target:  5'- gUGUAUAUAUGGCUUCGGUGUUAACCCu -3'
miRNA:   3'- -ACAUAUAUACCGAAGCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 162630 0.85 0.69591
Target:  5'- uUGUAUAUA--GCUUgGGUGUUAACCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 163423 0.77 0.969231
Target:  5'- aGUAaaUAUAUaGCUUaGGUGUUAACCCu -3'
miRNA:   3'- aCAU--AUAUAcCGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 52417 0.77 0.977783
Target:  5'- aGUAUGUAUauaGCUUaaGUGUUAACCCu -3'
miRNA:   3'- aCAUAUAUAc--CGAAgcCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 182661 0.76 0.9802
Target:  5'- uUGUAUGUAUaGCUUaGGUG-UAACCCu -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACaAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 110041 0.75 0.99203
Target:  5'- uUGUA-AUAUGGCUUaGaUGUUAACCCu -3'
miRNA:   3'- -ACAUaUAUACCGAAgCcACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 11449 0.74 0.994077
Target:  5'- cGUAUAUA--GCUUaGGUGUUAACUCg -3'
miRNA:   3'- aCAUAUAUacCGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 95423 0.74 0.994928
Target:  5'- -uUAUAUAUGaacaaucagcaaGCUUaGGUGUUAACCCu -3'
miRNA:   3'- acAUAUAUAC------------CGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 153066 0.73 0.996906
Target:  5'- aGUAUAUA--GUUUaGGUGUUAACCCc -3'
miRNA:   3'- aCAUAUAUacCGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 131701 0.73 0.998198
Target:  5'- -aUAUAUAUaGCUUaGGUGUUAAUCCu -3'
miRNA:   3'- acAUAUAUAcCGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 184840 0.72 0.998512
Target:  5'- uUGUAUAUAa--CUUaGGUGUUAACCCu -3'
miRNA:   3'- -ACAUAUAUaccGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 3410 0.72 0.998778
Target:  5'- cUGUucAUAUAUaGCUUaaGUGUUAACCCu -3'
miRNA:   3'- -ACA--UAUAUAcCGAAgcCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 157064 0.72 0.999002
Target:  5'- uUGUGUAUA--GCUUaGGUGUUAACaCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAgCCACAAUUG-GG- -5'
28252 5' -44.4 NC_005902.1 + 20092 0.72 0.999347
Target:  5'- gUGUAUAUAUaGCUUaaguauuaaaaGGUGUUuACCCu -3'
miRNA:   3'- -ACAUAUAUAcCGAAg----------CCACAAuUGGG- -5'
28252 5' -44.4 NC_005902.1 + 6565 0.71 0.999477
Target:  5'- aGUAUAUAUaaauaaCUUaGGUGUUAACCCu -3'
miRNA:   3'- aCAUAUAUAcc----GAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 20321 0.7 0.999881
Target:  5'- uUGUAUAUAUaGCUUaGGUGUUAAUa- -3'
miRNA:   3'- -ACAUAUAUAcCGAAgCCACAAUUGgg -5'
28252 5' -44.4 NC_005902.1 + 165974 0.69 0.999962
Target:  5'- uUGUuuGUAUAUGGCUUauGUGUUAAa-- -3'
miRNA:   3'- -ACA--UAUAUACCGAAgcCACAAUUggg -5'
28252 5' -44.4 NC_005902.1 + 34852 0.69 0.99998
Target:  5'- -cUAUAUAUaaCUUaGGUGUUAACCCu -3'
miRNA:   3'- acAUAUAUAccGAAgCCACAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 6285 0.68 0.999985
Target:  5'- uUGUAUAUA--GCUUCaGUaUUAACCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAGcCAcAAUUGGG- -5'
28252 5' -44.4 NC_005902.1 + 23442 0.68 0.99999
Target:  5'- uUGUAUAUA--GCUUgaauGUGUUAGCCCu -3'
miRNA:   3'- -ACAUAUAUacCGAAgc--CACAAUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.