Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28252 | 5' | -44.4 | NC_005902.1 | + | 3410 | 0.72 | 0.998778 |
Target: 5'- cUGUucAUAUAUaGCUUaaGUGUUAACCCu -3' miRNA: 3'- -ACA--UAUAUAcCGAAgcCACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 4871 | 0.66 | 1 |
Target: 5'- uUGcUAUcaGUGGCacgUUUGGaGUUAACCCu -3' miRNA: 3'- -AC-AUAuaUACCG---AAGCCaCAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 6285 | 0.68 | 0.999985 |
Target: 5'- uUGUAUAUA--GCUUCaGUaUUAACCCu -3' miRNA: 3'- -ACAUAUAUacCGAAGcCAcAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 6565 | 0.71 | 0.999477 |
Target: 5'- aGUAUAUAUaaauaaCUUaGGUGUUAACCCu -3' miRNA: 3'- aCAUAUAUAcc----GAAgCCACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 11449 | 0.74 | 0.994077 |
Target: 5'- cGUAUAUA--GCUUaGGUGUUAACUCg -3' miRNA: 3'- aCAUAUAUacCGAAgCCACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 20092 | 0.72 | 0.999347 |
Target: 5'- gUGUAUAUAUaGCUUaaguauuaaaaGGUGUUuACCCu -3' miRNA: 3'- -ACAUAUAUAcCGAAg----------CCACAAuUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 20153 | 0.67 | 0.999999 |
Target: 5'- cGUAUAUA--GCUUaGGUGUUAaaggguauucACCCu -3' miRNA: 3'- aCAUAUAUacCGAAgCCACAAU----------UGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 20321 | 0.7 | 0.999881 |
Target: 5'- uUGUAUAUAUaGCUUaGGUGUUAAUa- -3' miRNA: 3'- -ACAUAUAUAcCGAAgCCACAAUUGgg -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 23442 | 0.68 | 0.99999 |
Target: 5'- uUGUAUAUA--GCUUgaauGUGUUAGCCCu -3' miRNA: 3'- -ACAUAUAUacCGAAgc--CACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 34852 | 0.69 | 0.99998 |
Target: 5'- -cUAUAUAUaaCUUaGGUGUUAACCCu -3' miRNA: 3'- acAUAUAUAccGAAgCCACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 48264 | 0.67 | 0.999999 |
Target: 5'- uUGUAUAUAUaGCUUaGGUGUUAAa-- -3' miRNA: 3'- -ACAUAUAUAcCGAAgCCACAAUUggg -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 50083 | 0.67 | 0.999998 |
Target: 5'- uUGUAUAUA--GCUUaGGUaUUAACCCu -3' miRNA: 3'- -ACAUAUAUacCGAAgCCAcAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 52417 | 0.77 | 0.977783 |
Target: 5'- aGUAUGUAUauaGCUUaaGUGUUAACCCu -3' miRNA: 3'- aCAUAUAUAc--CGAAgcCACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 54374 | 0.67 | 0.999999 |
Target: 5'- gUGUAUGUAUaGCUUaGGUGUUAAa-- -3' miRNA: 3'- -ACAUAUAUAcCGAAgCCACAAUUggg -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 74809 | 0.67 | 0.999998 |
Target: 5'- gUGUAUAUAUaGCUUaGGUGUUAAaagguuaauUCCu -3' miRNA: 3'- -ACAUAUAUAcCGAAgCCACAAUU---------GGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 85922 | 0.68 | 0.999997 |
Target: 5'- -cUAUAUAUGaacauauauaauauaGCUUaGGUGUUAAUCCu -3' miRNA: 3'- acAUAUAUAC---------------CGAAgCCACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 95423 | 0.74 | 0.994928 |
Target: 5'- -uUAUAUAUGaacaaucagcaaGCUUaGGUGUUAACCCu -3' miRNA: 3'- acAUAUAUAC------------CGAAgCCACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 100002 | 0.68 | 0.999997 |
Target: 5'- -cUAUAUAUGaacauauauaauauaGCUUaGGUGUUAAUCCu -3' miRNA: 3'- acAUAUAUAC---------------CGAAgCCACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 104759 | 0.66 | 1 |
Target: 5'- uUGUAUAUA--GCUUaGaUGUUAACCCu -3' miRNA: 3'- -ACAUAUAUacCGAAgCcACAAUUGGG- -5' |
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28252 | 5' | -44.4 | NC_005902.1 | + | 110041 | 0.75 | 0.99203 |
Target: 5'- uUGUA-AUAUGGCUUaGaUGUUAACCCu -3' miRNA: 3'- -ACAUaUAUACCGAAgCcACAAUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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