miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 90173 0.66 1
Target:  5'- aUGCCUUaggaguuagagggUUAAUACaUAAGCUAUAUAu -3'
miRNA:   3'- aAUGGGA-------------AAUUGUGgAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 42373 0.66 1
Target:  5'- uUUACCUUUUAACAU--AAGUUAUAUu -3'
miRNA:   3'- -AAUGGGAAAUUGUGgaUUCGAUAUAu -5'
28254 3' -43.1 NC_005902.1 + 165878 0.66 1
Target:  5'- -aACCCUUUAACuuCUAAGgUGUc-- -3'
miRNA:   3'- aaUGGGAAAUUGugGAUUCgAUAuau -5'
28254 3' -43.1 NC_005902.1 + 49104 0.66 1
Target:  5'- gUAUCaCUUUAAUACCUAcaCUAUAUAc -3'
miRNA:   3'- aAUGG-GAAAUUGUGGAUucGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 23313 0.66 1
Target:  5'- -------aUAACAUCUAAGCUAUAUGu -3'
miRNA:   3'- aaugggaaAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 110166 0.66 1
Target:  5'- aUACCCUUUAAUuCCUAAgGCa----- -3'
miRNA:   3'- aAUGGGAAAUUGuGGAUU-CGauauau -5'
28254 3' -43.1 NC_005902.1 + 58803 0.66 1
Target:  5'- gUACUUUUUAACauuuuaaACUUAAGCUAUAa- -3'
miRNA:   3'- aAUGGGAAAUUG-------UGGAUUCGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 18693 0.66 1
Target:  5'- uUUACCCUUUAAUuCCUaAAGCa----- -3'
miRNA:   3'- -AAUGGGAAAUUGuGGA-UUCGauauau -5'
28254 3' -43.1 NC_005902.1 + 140684 0.66 1
Target:  5'- -aACuCUUUUAACAUCcAAGCUAUAa- -3'
miRNA:   3'- aaUG-GGAAAUUGUGGaUUCGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 75963 0.66 1
Target:  5'- -aACCCUUUAua---UAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUuguggAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 160882 0.66 1
Target:  5'- -----aUUUAACcCCUAAGCUAUAUAc -3'
miRNA:   3'- aaugggAAAUUGuGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 133229 0.66 1
Target:  5'- -cACCUUUUAACACCUGu-UUAUAUu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUucGAUAUAu -5'
28254 3' -43.1 NC_005902.1 + 24302 0.66 1
Target:  5'- uUUACUCUUUAACA-CUAGGCcAUAc- -3'
miRNA:   3'- -AAUGGGAAAUUGUgGAUUCGaUAUau -5'
28254 3' -43.1 NC_005902.1 + 19796 0.66 1
Target:  5'- -aACUCUUUAACGCauaAGGCuUAUAUAa -3'
miRNA:   3'- aaUGGGAAAUUGUGga-UUCG-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 31154 0.66 1
Target:  5'- aUACCCUUUAACuCCUcuacauGCUGa--- -3'
miRNA:   3'- aAUGGGAAAUUGuGGAuu----CGAUauau -5'
28254 3' -43.1 NC_005902.1 + 5043 0.67 0.999999
Target:  5'- -aGCCCUUUAACuCCUaAAGCg----- -3'
miRNA:   3'- aaUGGGAAAUUGuGGA-UUCGauauau -5'
28254 3' -43.1 NC_005902.1 + 116670 0.67 0.999999
Target:  5'- -aAUuuUUUAACACCUGaAGCuUAUAUAg -3'
miRNA:   3'- aaUGggAAAUUGUGGAU-UCG-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 102204 0.67 1
Target:  5'- -aACCCUUUAACuCCUAAGaUAUc-- -3'
miRNA:   3'- aaUGGGAAAUUGuGGAUUCgAUAuau -5'
28254 3' -43.1 NC_005902.1 + 145336 0.67 1
Target:  5'- -cACUCUU---UAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAauuGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 89960 0.67 1
Target:  5'- -aACCCUUUAACuCCUAAgGCa----- -3'
miRNA:   3'- aaUGGGAAAUUGuGGAUU-CGauauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.