Results 1 - 20 of 419 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28254 | 3' | -43.1 | NC_005902.1 | + | 172812 | 1.06 | 0.078691 |
Target: 5'- uUUACCCUUUAACACCUAAGCUAUAUAu -3' miRNA: 3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 165885 | 1.05 | 0.081073 |
Target: 5'- aUACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 105261 | 1.05 | 0.081073 |
Target: 5'- uUUACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 143771 | 1.05 | 0.081073 |
Target: 5'- aUACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 128770 | 1.05 | 0.081073 |
Target: 5'- aUACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 97174 | 1.02 | 0.118981 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 50209 | 1.02 | 0.118981 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 23255 | 1.02 | 0.118981 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 169122 | 1.02 | 0.118981 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 184860 | 1.02 | 0.118981 |
Target: 5'- -aACCCUUUAACACCUAAGCUGUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 60465 | 1.02 | 0.118981 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 47234 | 1.02 | 0.1225 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 13181 | 1.02 | 0.1225 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 91856 | 1.02 | 0.1225 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 99555 | 1.02 | 0.1225 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 157227 | 1.02 | 0.1225 |
Target: 5'- -aACCCUUUAACACCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 50040 | 1.02 | 0.126114 |
Target: 5'- uUUACCCUUUAACACCUAAGCUAUGUu -3' miRNA: 3'- -AAUGGGAAAUUGUGGAUUCGAUAUAu -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 120244 | 1.02 | 0.129828 |
Target: 5'- -aACCCUUUAACACCUGAGCUAUAUGc -3' miRNA: 3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 31413 | 1.01 | 0.141582 |
Target: 5'- uUUACCCUUUAAUACCUAAGCUAUAUAc -3' miRNA: 3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 97433 | 1 | 0.149951 |
Target: 5'- uUUACCCUUUAACACCUAAGCUAUAc- -3' miRNA: 3'- -AAUGGGAAAUUGUGGAUUCGAUAUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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