miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 1144 0.93 0.355647
Target:  5'- -aACCCUUUAAgACCUAAGCUGUAUAc -3'
miRNA:   3'- aaUGGGAAAUUgUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 1203 0.69 0.99998
Target:  5'- ------gUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- aaugggaAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 1260 0.86 0.695477
Target:  5'- -aACUCUUcAACACCUAGGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAaUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 1407 0.76 0.985816
Target:  5'- -cACCuUUUUAACcCCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGG-GAAAUUGuGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 1480 0.68 0.999998
Target:  5'- gUACCCUUUAAauCCUAAGgCuUAUAUGa -3'
miRNA:   3'- aAUGGGAAAUUguGGAUUC-G-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 1710 0.72 0.999418
Target:  5'- --uUUCUUUAAUAUCUAAGCUAUAUu -3'
miRNA:   3'- aauGGGAAAUUGUGGAUUCGAUAUAu -5'
28254 3' -43.1 NC_005902.1 + 3004 0.76 0.989801
Target:  5'- -aAUCCUucaguuuuuaaaauaUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGA---------------AAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 3073 0.8 0.905284
Target:  5'- -aACgaUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGggAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 3360 0.73 0.997809
Target:  5'- cUAUCUUUUAguuuuuaaaggguuACACCUAAGCUAUAc- -3'
miRNA:   3'- aAUGGGAAAU--------------UGUGGAUUCGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 4194 0.8 0.912079
Target:  5'- -aACCUUUUAAUAUUUAAGCUAUAUAa -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 4608 0.83 0.822165
Target:  5'- aUAUCCUUUAACAUCUAAGCgAUAUAc -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCGaUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 5043 0.67 0.999999
Target:  5'- -aGCCCUUUAACuCCUaAAGCg----- -3'
miRNA:   3'- aaUGGGAAAUUGuGGA-UUCGauauau -5'
28254 3' -43.1 NC_005902.1 + 5112 0.79 0.946609
Target:  5'- -cACUCUUUAACAUCUAAGCaAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGaUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 5647 0.82 0.85853
Target:  5'- -aACCCUUUAACAaUUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUgGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 6174 0.67 1
Target:  5'- -aACUCUUUAACucuuaaggcauuAUUUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUG------------UGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 6305 0.74 0.995664
Target:  5'- -aACCCUUUAAUcuuuaagACCUAAGCcAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUG-------UGGAUUCGaUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 7599 0.82 0.85853
Target:  5'- -cACCCUUUAACACCUAAaUUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUcGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 8171 0.7 0.999874
Target:  5'- -aAUCCU--AACAUUUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAaaUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 8413 0.74 0.996412
Target:  5'- -cACUUUUUAACACCUAAaCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUcGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 10386 0.71 0.999834
Target:  5'- --cCCCUUUAAUACUUAAaCUAUAUAc -3'
miRNA:   3'- aauGGGAAAUUGUGGAUUcGAUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.