miRNA display CGI


Results 1 - 20 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 128770 1.05 0.081073
Target:  5'- aUACCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 30796 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 85339 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 42373 0.66 1
Target:  5'- uUUACCUUUUAACAU--AAGUUAUAUu -3'
miRNA:   3'- -AAUGGGAAAUUGUGgaUUCGAUAUAu -5'
28254 3' -43.1 NC_005902.1 + 13181 1.02 0.1225
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 47234 1.02 0.1225
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 99555 1.02 0.1225
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 50040 1.02 0.126114
Target:  5'- uUUACCCUUUAACACCUAAGCUAUGUu -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAu -5'
28254 3' -43.1 NC_005902.1 + 45075 0.99 0.177815
Target:  5'- uUUACCUUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 167155 0.96 0.247506
Target:  5'- --uCCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aauGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 34813 0.96 0.240925
Target:  5'- -aACCCUUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 54048 1 0.16805
Target:  5'- aUAUCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aAUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 23255 1.02 0.118981
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 48378 0.96 0.240925
Target:  5'- -aACCCUUUAACACCUAAGUUAUGUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 50209 1.02 0.118981
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 97433 1 0.149951
Target:  5'- uUUACCCUUUAACACCUAAGCUAUAc- -3'
miRNA:   3'- -AAUGGGAAAUUGUGGAUUCGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 136567 0.96 0.240925
Target:  5'- -aACCCUUUAACACCUAAGUUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 61619 0.96 0.254235
Target:  5'- -aACCCUUUAACAUCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 97174 1.02 0.118981
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAu -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 91856 1.02 0.1225
Target:  5'- -aACCCUUUAACACCUAAGCUAUAUAc -3'
miRNA:   3'- aaUGGGAAAUUGUGGAUUCGAUAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.