miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 3' -43.1 NC_005902.1 + 140684 0.66 1
Target:  5'- -aACuCUUUUAACAUCcAAGCUAUAa- -3'
miRNA:   3'- aaUG-GGAAAUUGUGGaUUCGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 18693 0.66 1
Target:  5'- uUUACCCUUUAAUuCCUaAAGCa----- -3'
miRNA:   3'- -AAUGGGAAAUUGuGGA-UUCGauauau -5'
28254 3' -43.1 NC_005902.1 + 58803 0.66 1
Target:  5'- gUACUUUUUAACauuuuaaACUUAAGCUAUAa- -3'
miRNA:   3'- aAUGGGAAAUUG-------UGGAUUCGAUAUau -5'
28254 3' -43.1 NC_005902.1 + 111169 0.67 1
Target:  5'- -aACCCUUUAACuCCUAAuGCg----- -3'
miRNA:   3'- aaUGGGAAAUUGuGGAUU-CGauauau -5'
28254 3' -43.1 NC_005902.1 + 34702 0.67 1
Target:  5'- gUAUCCUuuauucuuUUAACACCUAuaCUAUAUAu -3'
miRNA:   3'- aAUGGGA--------AAUUGUGGAUucGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 32862 0.67 0.999999
Target:  5'- uUUAUCUUUUAAUACCUaAAGCU-UAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGGA-UUCGAuAUAU- -5'
28254 3' -43.1 NC_005902.1 + 181388 0.67 0.999999
Target:  5'- -cACUgCUUUAAUcCCUAAGUUAUAUAa -3'
miRNA:   3'- aaUGG-GAAAUUGuGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 180955 0.67 0.999999
Target:  5'- aUACCCUUUAAC-CCau-GCUGUu-- -3'
miRNA:   3'- aAUGGGAAAUUGuGGauuCGAUAuau -5'
28254 3' -43.1 NC_005902.1 + 136889 0.67 0.999999
Target:  5'- -aACUaUUUAACACCcAAGUUAUAUAu -3'
miRNA:   3'- aaUGGgAAAUUGUGGaUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 116670 0.67 0.999999
Target:  5'- -aAUuuUUUAACACCUGaAGCuUAUAUAg -3'
miRNA:   3'- aaUGggAAAUUGUGGAU-UCG-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 100946 0.67 0.999999
Target:  5'- uUUACCCcuaAACuCCUAAGCUAUu-- -3'
miRNA:   3'- -AAUGGGaaaUUGuGGAUUCGAUAuau -5'
28254 3' -43.1 NC_005902.1 + 68952 0.67 0.999999
Target:  5'- aUAUaaggUUAAUACUUAAGCUAUAUAa -3'
miRNA:   3'- aAUGgga-AAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 94887 0.67 0.999999
Target:  5'- uUUACCCUUUAAUACauauaCUAUAUAc -3'
miRNA:   3'- -AAUGGGAAAUUGUGgauucGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 5043 0.67 0.999999
Target:  5'- -aGCCCUUUAACuCCUaAAGCg----- -3'
miRNA:   3'- aaUGGGAAAUUGuGGA-UUCGauauau -5'
28254 3' -43.1 NC_005902.1 + 23830 0.67 0.999999
Target:  5'- -aACa-UUUAACAUUUAAGCUAUAUAu -3'
miRNA:   3'- aaUGggAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 169543 0.68 0.999998
Target:  5'- gUUACagggUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGgga-AAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 15471 0.68 0.999998
Target:  5'- gUUACaaggUUAAUGCUUAAGCUAUAUAc -3'
miRNA:   3'- -AAUGgga-AAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 76204 0.68 0.999998
Target:  5'- ----aUUUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- aauggGAAAUUGUGGAUUCGAUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 1480 0.68 0.999998
Target:  5'- gUACCCUUUAAauCCUAAGgCuUAUAUGa -3'
miRNA:   3'- aAUGGGAAAUUguGGAUUC-G-AUAUAU- -5'
28254 3' -43.1 NC_005902.1 + 40913 0.68 0.999998
Target:  5'- -aAUCC-UUAAUACCUAAaGCUAUAa- -3'
miRNA:   3'- aaUGGGaAAUUGUGGAUU-CGAUAUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.