Results 61 - 80 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 124519 | 0.71 | 0.999857 |
Target: 5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUcCAcAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 107183 | 0.71 | 0.999918 |
Target: 5'- aGUAUAUAGCUUAaGG-GUUAAAaGGUu -3' miRNA: 3'- cCAUAUAUCGAAU-CCaCAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 181431 | 0.71 | 0.999954 |
Target: 5'- aGUAUAUcGCUUAGaUGUUAAAGGa- -3' miRNA: 3'- cCAUAUAuCGAAUCcACAAUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 90636 | 0.71 | 0.999954 |
Target: 5'- -aUAUAUAaUUUAGGUGUUAAAGGa- -3' miRNA: 3'- ccAUAUAUcGAAUCCACAAUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 83776 | 0.71 | 0.999954 |
Target: 5'- aGUAUAUcaCUUAaGUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAucGAAUcCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 122676 | 0.72 | 0.999692 |
Target: 5'- aGUGUAUAGCUUAGaGaUGUUAAAGaGUu -3' miRNA: 3'- cCAUAUAUCGAAUC-C-ACAAUUUCcCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 22594 | 0.72 | 0.999814 |
Target: 5'- -uUAUAUAGcCUUAGGauUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUC-GAAUCCacAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 94733 | 0.72 | 0.99976 |
Target: 5'- cGUAUAUAGUUUAaGUGUUAAAaGGUa -3' miRNA: 3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 1452 | 0.72 | 0.99976 |
Target: 5'- aGUAUAUAGCUUAaGUGUUAAAGc-- -3' miRNA: 3'- cCAUAUAUCGAAUcCACAAUUUCcca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 90279 | 0.72 | 0.999814 |
Target: 5'- -aUAUAUAGCUUAaGUGUUAAAaGGUa -3' miRNA: 3'- ccAUAUAUCGAAUcCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 145373 | 0.72 | 0.999814 |
Target: 5'- -aUAUAUAGCUUAaacGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUccaCAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 97749 | 0.72 | 0.999692 |
Target: 5'- --cAUAUAGCUUAGGUGUUAAu---- -3' miRNA: 3'- ccaUAUAUCGAAUCCACAAUUuccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 42400 | 0.72 | 0.999692 |
Target: 5'- aGUAUAUAGCUUAGGUGUc------- -3' miRNA: 3'- cCAUAUAUCGAAUCCACAauuuccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 84969 | 0.72 | 0.999692 |
Target: 5'- -aUAUAUAGUgUAGaUGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGaAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 69159 | 0.72 | 0.999692 |
Target: 5'- -uUGUAUAGuCUUAGGaaUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUC-GAAUCCacAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 118112 | 0.72 | 0.999692 |
Target: 5'- uGUAUAUAGUUaGGG-GUcAAAGGGUa -3' miRNA: 3'- cCAUAUAUCGAaUCCaCAaUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 5159 | 0.72 | 0.999608 |
Target: 5'- --gAUAUuGCUUAGaUGUUAAAGGGUu -3' miRNA: 3'- ccaUAUAuCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 51716 | 0.72 | 0.999608 |
Target: 5'- uGUAUAU-GCUUAaaUGUUAAAGGGUa -3' miRNA: 3'- cCAUAUAuCGAAUccACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 100020 | 0.72 | 0.999692 |
Target: 5'- --aAUAUAGCUUAGGUGUUAAu---- -3' miRNA: 3'- ccaUAUAUCGAAUCCACAAUUuccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 85940 | 0.72 | 0.999692 |
Target: 5'- --aAUAUAGCUUAGGUGUUAAu---- -3' miRNA: 3'- ccaUAUAUCGAAUCCACAAUUuccca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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