miRNA display CGI


Results 101 - 120 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 78240 0.74 0.997455
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 67393 0.75 0.99497
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 20325 0.75 0.996959
Target:  5'- -aUAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 69098 0.75 0.99497
Target:  5'- -uUAUAUAaCcUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGaAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 16531 0.75 0.995725
Target:  5'- -aUAUAUAGCUcAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAaUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 165757 0.75 0.996385
Target:  5'- aGUAUAUGuuaaCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUc---GAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 184780 0.75 0.996385
Target:  5'- -aUAUAUAGCcUAGGUGUUGAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGaAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 131703 0.75 0.996959
Target:  5'- -aUAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 163428 0.75 0.996795
Target:  5'- -aUAUAUAGCUUAGGUGUUAacccuuuaaauccuAAGGc- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAU--------------UUCCca -5'
28254 5' -43.2 NC_005902.1 + 149242 0.75 0.99497
Target:  5'- uGUGUAUAGCUUAaGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 118683 0.75 0.996959
Target:  5'- -aUAUAUAGUUaGGG-GUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAaUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 113823 0.76 0.99411
Target:  5'- -aUAUAUAGUUUAGGUGUUAAcGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuCCca -5'
28254 5' -43.2 NC_005902.1 + 100425 0.76 0.990802
Target:  5'- aGUAUAUAGCUUaAGG-GUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAA-UCCaCAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 34757 0.76 0.990802
Target:  5'- -aUAUAUAGCUUAGGUGUUAAGa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 67748 0.76 0.993136
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 104120 0.76 0.990802
Target:  5'- ----cAUGGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccauaUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 149879 0.76 0.990802
Target:  5'- -aUAUAUAGCUUAGaUGUUaAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 22655 0.76 0.990802
Target:  5'- -aUAUAUAGCUUAGaUGUUaAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 137788 0.76 0.99411
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 16600 0.76 0.993136
Target:  5'- -aUAUAcAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUaUCGAAUcCACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.