miRNA display CGI


Results 121 - 140 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 22655 0.76 0.990802
Target:  5'- -aUAUAUAGCUUAGaUGUUaAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 75853 0.77 0.986181
Target:  5'- uGUAUAUAGUUcAGGUaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAaUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 114843 0.77 0.984299
Target:  5'- uGUAUAUAGCUUAaGUGUuaaaaagguUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACA---------AUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 5691 0.77 0.984299
Target:  5'- uGUAUAUAGCUUAGGgGUUAAAGa-- -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 92202 0.77 0.989422
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAuGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 157888 0.77 0.987885
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 182967 0.77 0.989422
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAucGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccCA- -5'
28254 5' -43.2 NC_005902.1 + 28192 0.77 0.989422
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAu--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 162754 0.77 0.987885
Target:  5'- -aUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 48268 0.77 0.986181
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 48608 0.77 0.986181
Target:  5'- aGUGUAUAGCUUAGaUGUUAAAaGGUg -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 90096 0.77 0.986181
Target:  5'- aGUAUAUAaCUUAaGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUcGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 164731 0.77 0.986181
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 130971 0.77 0.987885
Target:  5'- -uUAUAUAcaagugaaCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUc-------GAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 117107 0.77 0.987885
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 6346 0.77 0.987885
Target:  5'- -aUAUAUAGCUUAGGUuUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 3109 0.77 0.986181
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 184631 0.77 0.986181
Target:  5'- cGUAUAUAGCUUAGGgGUUAAAaaGGUg -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUc-CCA- -5'
28254 5' -43.2 NC_005902.1 + 12863 0.78 0.979959
Target:  5'- uGUAUAUAaCUUAGGaGUUAAGGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 78119 0.78 0.971859
Target:  5'- aGUAUAUAGCUUAGaGUuuaUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUC-CAca-AUUUCCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.