miRNA display CGI


Results 141 - 160 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 78119 0.78 0.971859
Target:  5'- aGUAUAUAGCUUAGaGUuuaUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUC-CAca-AUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 45121 0.78 0.971859
Target:  5'- cGUAUAUAGCUUAGGUGUUAu----- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUuuccca -5'
28254 5' -43.2 NC_005902.1 + 130912 0.78 0.982229
Target:  5'- uGUuUAUAGCUUAGGauUUAAAGGGUa -3'
miRNA:   3'- cCAuAUAUCGAAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 75130 0.78 0.982229
Target:  5'- -aUAUAUAGCUUAGGUauaAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcaaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 12863 0.78 0.979959
Target:  5'- uGUAUAUAaCUUAGGaGUUAAGGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 36357 0.78 0.977481
Target:  5'- -aUAUAUAGCUUAGGU---AAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcaaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 69209 0.78 0.974784
Target:  5'- aGGUGUAUAuaaCUUAGaUGUUAAAGGGUa -3'
miRNA:   3'- -CCAUAUAUc--GAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 116672 0.79 0.968697
Target:  5'- --cAUAUAGUUUAGGUGUUAAAcGGUa -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 162631 0.79 0.965291
Target:  5'- uGUAUAUAGCUUGGGUGUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 114290 0.79 0.957714
Target:  5'- aGUAUGUAGUgUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGaAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 95983 0.79 0.957714
Target:  5'- uGUAUAUAaCUUAGGUGUU-AAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAuUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 55158 0.79 0.957714
Target:  5'- uGUAUAUAGCUUGaGaGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUcCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 156592 0.8 0.953531
Target:  5'- -aUAUAUAaUUUGGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 15510 0.8 0.949078
Target:  5'- -aUAUAUAGUUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 48611 0.8 0.949078
Target:  5'- -aUAUAUAGUUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 157065 0.8 0.953531
Target:  5'- uGUGUAUAGCUUAGGUGUUAAc---- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 138857 0.8 0.94435
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGGu- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 77184 0.81 0.934056
Target:  5'- -aUAUAUAaUUUAGGUGUUGAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 101108 0.81 0.910082
Target:  5'- uGUAUAUuGCUUAaGUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAuCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 137662 0.81 0.916499
Target:  5'- aGUAcAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUaUAUcGAAUCCACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.