Results 61 - 80 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 124421 | 0.9 | 0.533466 |
Target: 5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 100701 | 0.9 | 0.533466 |
Target: 5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 165979 | 0.9 | 0.555148 |
Target: 5'- uGUAUAUGGCUUAuGUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUcCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 87103 | 0.89 | 0.57708 |
Target: 5'- -uUAUAUAGCUUAGGgGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCaCAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 65798 | 0.89 | 0.599198 |
Target: 5'- --cAUAUAGCUcAGGUGUUAAAGGGUu -3' miRNA: 3'- ccaUAUAUCGAaUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 105307 | 0.89 | 0.57708 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGaGUu -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 146944 | 0.89 | 0.57708 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGaGUu -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 3478 | 0.88 | 0.654826 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAaaaucGAGuGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAU-----UUC-CCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 169167 | 0.88 | 0.621431 |
Target: 5'- --gAUAUAGCUUAGGUGUUAAAGGa- -3' miRNA: 3'- ccaUAUAUCGAAUCCACAAUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 162576 | 0.87 | 0.665929 |
Target: 5'- aGUAUAUAGaUUAGGUGUUAAAGGGc -3' miRNA: 3'- cCAUAUAUCgAAUCCACAAUUUCCCa -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 178441 | 0.87 | 0.676999 |
Target: 5'- aGUAUAUAaUUUAGGUGUUAAAGGGUg -3' miRNA: 3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 72257 | 0.87 | 0.709904 |
Target: 5'- -aUAUAUAGCUUAGuUGUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 76684 | 0.87 | 0.698999 |
Target: 5'- -aUAUAUAGCUUAaGUGUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 109956 | 0.87 | 0.709904 |
Target: 5'- -aUAUAUAGCUUAGGUcUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCAcAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 143064 | 0.87 | 0.709904 |
Target: 5'- -aUAUAUAGCUUAGaUGUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 76246 | 0.87 | 0.709904 |
Target: 5'- -aUAUAUAaCUUAGGUGUUAAAGGGUg -3' miRNA: 3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 96037 | 0.87 | 0.709904 |
Target: 5'- -aUAUAUAaCUUAGGUGUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 48290 | 0.87 | 0.698999 |
Target: 5'- -aUAUAUAGCUUAaGUGUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 169577 | 0.87 | 0.698999 |
Target: 5'- aGUGUAUAGUUUAGGUGUUAAAaGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 39612 | 0.86 | 0.752626 |
Target: 5'- aGUGaauUAUAGCUUAGGUGUUAAAGGa- -3' miRNA: 3'- cCAU---AUAUCGAAUCCACAAUUUCCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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