miRNA display CGI


Results 81 - 100 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 11449 0.85 0.773281
Target:  5'- cGUAUAUAGCUUAGGUGUUAAcucGGUc -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUuc-CCA- -5'
28254 5' -43.2 NC_005902.1 + 156432 0.85 0.793339
Target:  5'- aGUAUAUAGCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 144191 0.85 0.793339
Target:  5'- uGUAUAUAGUUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 27813 0.85 0.793339
Target:  5'- uGUAUAUAGCUUAGGcaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 145976 0.85 0.763023
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 74813 0.85 0.763023
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 15192 0.85 0.793339
Target:  5'- uGUAUAUAGCUUAcaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 135222 0.85 0.773281
Target:  5'- aGUAUAUAGUUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 137930 0.84 0.812709
Target:  5'- uGUAUAUAGCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 15341 0.84 0.812709
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 76126 0.84 0.822108
Target:  5'- --cAUAUAGCUUAGGUcUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 100136 0.84 0.822108
Target:  5'- -aUAUAUAGCUUAGaUGUUAAAGGGg -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 164874 0.84 0.831302
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 31459 0.84 0.840282
Target:  5'- aGUAUAUAGCUUAGGU---AAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcaaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 86056 0.84 0.822108
Target:  5'- -aUAUAUAGCUUAGaUGUUAAAGGGg -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 170619 0.84 0.812709
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 156829 0.84 0.812709
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 51463 0.84 0.812709
Target:  5'- uGUAUAUAGCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 87406 0.84 0.812709
Target:  5'- uGUAUAUAGCUUAGGUa-UGAAGGGg -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcaAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 180393 0.83 0.857561
Target:  5'- aGUAUAUAGCUUAauUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.