miRNA display CGI


Results 101 - 120 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 50229 0.83 0.857561
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 180393 0.83 0.857561
Target:  5'- aGUAUAUAGCUUAauUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 63399 0.83 0.865843
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUC-CCA- -5'
28254 5' -43.2 NC_005902.1 + 116860 0.83 0.873875
Target:  5'- --cAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 29255 0.83 0.873875
Target:  5'- aGUAUAUAGCUUAGGUGUU--AGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAuuUCCca -5'
28254 5' -43.2 NC_005902.1 + 68314 0.83 0.873875
Target:  5'- --cAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 38452 0.83 0.873875
Target:  5'- -aUAUAUAGCUUAGGUGUUAcAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUuUCCca -5'
28254 5' -43.2 NC_005902.1 + 110217 0.83 0.873875
Target:  5'- aGUAUAUAuaaUUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUc--GAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 71688 0.82 0.881652
Target:  5'- uGUAUAUAGCUUAGGUGUUAGAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 134368 0.82 0.889166
Target:  5'- aGUAUAUAGCUUAaGUGUUaAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 184895 0.82 0.889166
Target:  5'- uGUAUAcAGCUUAGGUcUUAAAGGGUu -3'
miRNA:   3'- cCAUAUaUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 69410 0.82 0.889166
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 144059 0.82 0.896412
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAc--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 110138 0.82 0.896412
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 101108 0.81 0.910082
Target:  5'- uGUAUAUuGCUUAaGUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAuCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 50496 0.81 0.916499
Target:  5'- uGUGUAucUAGUUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAU--AUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 179727 0.81 0.916499
Target:  5'- uGUAUAUGGCUUAGGUcuuaaagaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCAc-------AAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 137662 0.81 0.916499
Target:  5'- aGUAcAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUaUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 94033 0.81 0.916499
Target:  5'- -aUAUAUAGCUUAGGUauuuaaaaaGUUAAAGGGc -3'
miRNA:   3'- ccAUAUAUCGAAUCCA---------CAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 73971 0.81 0.922634
Target:  5'- -aUAUAUGaUUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.