miRNA display CGI


Results 101 - 120 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 69159 0.72 0.999692
Target:  5'- -uUGUAUAGuCUUAGGaaUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUC-GAAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 69209 0.78 0.974784
Target:  5'- aGGUGUAUAuaaCUUAGaUGUUAAAGGGUa -3'
miRNA:   3'- -CCAUAUAUc--GAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 69410 0.82 0.889166
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 71498 0.9 0.566087
Target:  5'- -uUAUAUAGCcUAGGUGUUAAAGGGg -3'
miRNA:   3'- ccAUAUAUCGaAUCCACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 71688 0.82 0.881652
Target:  5'- uGUAUAUAGCUUAGGUGUUAGAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 72257 0.87 0.709904
Target:  5'- -aUAUAUAGCUUAGuUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 73078 0.71 0.999857
Target:  5'- uGUAUAUuaCUUAuGUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAucGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 73971 0.81 0.922634
Target:  5'- -aUAUAUGaUUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 74813 0.85 0.763023
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 75130 0.78 0.982229
Target:  5'- -aUAUAUAGCUUAGGUauaAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcaaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 75853 0.77 0.986181
Target:  5'- uGUAUAUAGUUcAGGUaUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAaUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 76126 0.84 0.822108
Target:  5'- --cAUAUAGCUUAGGUcUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 76246 0.87 0.709904
Target:  5'- -aUAUAUAaCUUAGGUGUUAAAGGGUg -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 76684 0.87 0.698999
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 77140 0.66 1
Target:  5'- uGUAUAUAGCcUAGcUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGaAUCcACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 77184 0.81 0.934056
Target:  5'- -aUAUAUAaUUUAGGUGUUGAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 78119 0.78 0.971859
Target:  5'- aGUAUAUAGCUUAGaGUuuaUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUC-CAca-AUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 78240 0.74 0.997455
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 80098 0.9 0.522738
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 80776 1.13 0.039638
Target:  5'- gGGUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- -CCAUAUAUCGAAUCCACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.