miRNA display CGI


Results 121 - 140 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 81324 0.68 1
Target:  5'- aGUAUAUAGCUUAaaaGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUccaCAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 81950 0.68 0.999998
Target:  5'- aGUAUAUAGCUUAag---UAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccacaAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 83776 0.71 0.999954
Target:  5'- aGUAUAUcaCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAucGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 84911 0.69 0.999996
Target:  5'- aGUAUAUAGCUUAaauauUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccac-AAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 84969 0.72 0.999692
Target:  5'- -aUAUAUAGUgUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGaAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 85095 0.73 0.999505
Target:  5'- ----aAUAGCUUAGGaGUUuAGGGGUa -3'
miRNA:   3'- ccauaUAUCGAAUCCaCAAuUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 85373 0.73 0.999379
Target:  5'- -aUAUAUAGCUUAGauaUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCcacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 85940 0.72 0.999692
Target:  5'- --aAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 86056 0.84 0.822108
Target:  5'- -aUAUAUAGCUUAGaUGUUAAAGGGg -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 86485 1.06 0.092724
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 87103 0.89 0.57708
Target:  5'- -uUAUAUAGCUUAGGgGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 87226 0.68 0.999999
Target:  5'- aGUAUAUAGCaUAaGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGaAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 87406 0.84 0.812709
Target:  5'- uGUAUAUAGCUUAGGUa-UGAAGGGg -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcaAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 88325 0.69 0.999994
Target:  5'- -aUAUAUAGCUUAGa---UAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCcacaAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 88607 1 0.192484
Target:  5'- --aGUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 88866 1 0.182277
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 90096 0.77 0.986181
Target:  5'- aGUAUAUAaCUUAaGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUcGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 90279 0.72 0.999814
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 90636 0.71 0.999954
Target:  5'- -aUAUAUAaUUUAGGUGUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 92202 0.77 0.989422
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAuGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUcCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.