miRNA display CGI


Results 141 - 160 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 92331 0.68 0.999999
Target:  5'- -cUAUAUAGCUUAGGU---AAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcaaUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 93881 0.67 1
Target:  5'- aGUAUAUAGCUUAGuUGUUAAAa--- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 94033 0.81 0.916499
Target:  5'- -aUAUAUAGCUUAGGUauuuaaaaaGUUAAAGGGc -3'
miRNA:   3'- ccAUAUAUCGAAUCCA---------CAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 94183 1.06 0.098218
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 94733 0.72 0.99976
Target:  5'- cGUAUAUAGUUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 95983 0.79 0.957714
Target:  5'- uGUAUAUAaCUUAGGUGUU-AAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAuUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 96037 0.87 0.709904
Target:  5'- -aUAUAUAaCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 97477 0.9 0.533466
Target:  5'- uGUAUAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 97749 0.72 0.999692
Target:  5'- --cAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 99599 0.73 0.999226
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGa-- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 99651 0.91 0.512093
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 100020 0.72 0.999692
Target:  5'- --aAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 100136 0.84 0.822108
Target:  5'- -aUAUAUAGCUUAGaUGUUAAAGGGg -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 100425 0.76 0.990802
Target:  5'- aGUAUAUAGCUUaAGG-GUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAA-UCCaCAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 100701 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 101108 0.81 0.910082
Target:  5'- uGUAUAUuGCUUAaGUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAuCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 101227 0.71 0.999918
Target:  5'- --cAUAUAGCUUAaGaGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUcCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 104120 0.76 0.990802
Target:  5'- ----cAUGGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccauaUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 104205 1.02 0.158833
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 104866 0.81 0.934056
Target:  5'- -aUAUAUAGCUUAGGUagGUauUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCA--CA--AUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.