miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 143803 0.9 0.555148
Target:  5'- uGUAUAUAGCUUAGGUGUUAAGaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 143680 0.71 0.999857
Target:  5'- uGUAUAUAaUUUAGaUGUUAAAGGGUg -3'
miRNA:   3'- cCAUAUAUcGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 143513 0.66 1
Target:  5'- --aGUGUAGCaaacgUUAGGauUUAAAGGGUa -3'
miRNA:   3'- ccaUAUAUCG-----AAUCCacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 143064 0.87 0.709904
Target:  5'- -aUAUAUAGCUUAGaUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 142026 0.92 0.460345
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 140962 0.92 0.44043
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 138857 0.8 0.94435
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGGu- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 138805 1.06 0.098218
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 137930 0.84 0.812709
Target:  5'- uGUAUAUAGCUUAaaUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUccACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 137788 0.76 0.99411
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 137662 0.81 0.916499
Target:  5'- aGUAcAUAaCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- cCAUaUAUcGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 136610 0.66 1
Target:  5'- ---uUAUAaCUUAGGUGUUAAAaGGUa -3'
miRNA:   3'- ccauAUAUcGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 136282 0.71 0.999918
Target:  5'- -aUAUAUAGUUUAGGUGUUGAGa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 136088 0.95 0.332178
Target:  5'- uGUAUAUAGCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 136001 0.94 0.38378
Target:  5'- ----cAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccauaUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 135930 0.94 0.38378
Target:  5'- aGUAUGUAGCUUAGGUGUUAggaucaAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAU------UUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 135831 1 0.182277
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 135222 0.85 0.773281
Target:  5'- aGUAUAUAGUUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 134439 0.73 0.999379
Target:  5'- ------cAGCUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- ccauauaUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 134368 0.82 0.889166
Target:  5'- aGUAUAUAGCUUAaGUGUUaAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAA-UUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.