miRNA display CGI


Results 101 - 120 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 118853 0.66 1
Target:  5'- ----gAUGcCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- ccauaUAUcGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 118683 0.75 0.996959
Target:  5'- -aUAUAUAGUUaGGG-GUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAaUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 118112 0.72 0.999692
Target:  5'- uGUAUAUAGUUaGGG-GUcAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAaUCCaCAaUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 117107 0.77 0.987885
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 116860 0.83 0.873875
Target:  5'- --cAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- ccaUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 116814 0.74 0.997455
Target:  5'- aGGaGUAUA-CUUAGGUGUUAAAGGu- -3'
miRNA:   3'- -CCaUAUAUcGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 116672 0.79 0.968697
Target:  5'- --cAUAUAGUUUAGGUGUUAAAcGGUa -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 114843 0.77 0.984299
Target:  5'- uGUAUAUAGCUUAaGUGUuaaaaagguUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACA---------AUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 114438 0.96 0.293209
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 114386 0.7 0.999976
Target:  5'- -aUAUAUAaCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 114290 0.79 0.957714
Target:  5'- aGUAUGUAGUgUAGGUGUUAAAaGGUa -3'
miRNA:   3'- cCAUAUAUCGaAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 113823 0.76 0.99411
Target:  5'- -aUAUAUAGUUUAGGUGUUAAcGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuCCca -5'
28254 5' -43.2 NC_005902.1 + 111437 0.66 1
Target:  5'- -aUAUAUAGCUUAuauaUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUccacAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 110217 0.83 0.873875
Target:  5'- aGUAUAUAuaaUUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUc--GAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 110138 0.82 0.896412
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 110079 0.66 1
Target:  5'- cGUAUAUAGCUUAua---UAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUccacaAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 109956 0.87 0.709904
Target:  5'- -aUAUAUAGCUUAGGUcUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 107830 0.74 0.998821
Target:  5'- cGUAUAUAGCUUAGaUGUUAAAGa-- -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 107183 0.71 0.999918
Target:  5'- aGUAUAUAGCUUAaGG-GUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAU-CCaCAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 105307 0.89 0.57708
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.