miRNA display CGI


Results 81 - 100 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 144191 0.85 0.793339
Target:  5'- uGUAUAUAGUUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 86056 0.84 0.822108
Target:  5'- -aUAUAUAGCUUAGaUGUUAAAGGGg -3'
miRNA:   3'- ccAUAUAUCGAAUCcACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 63399 0.83 0.865843
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGaGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUC-CCA- -5'
28254 5' -43.2 NC_005902.1 + 110138 0.82 0.896412
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGa- -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCca -5'
28254 5' -43.2 NC_005902.1 + 104866 0.81 0.934056
Target:  5'- -aUAUAUAGCUUAGGUagGUauUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCA--CA--AUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 154953 0.78 0.977481
Target:  5'- uGUucAUAGCUUGGGUGUUAAAaGGUg -3'
miRNA:   3'- cCAuaUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 114843 0.77 0.984299
Target:  5'- uGUAUAUAGCUUAaGUGUuaaaaagguUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACA---------AUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 134192 0.9 0.533466
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 29611 0.9 0.522738
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 52367 0.91 0.512093
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 113823 0.76 0.99411
Target:  5'- -aUAUAUAGUUUAGGUGUUAAcGGa- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuCCca -5'
28254 5' -43.2 NC_005902.1 + 20325 0.75 0.996959
Target:  5'- -aUAUAUAGCUUAGGUGUUAAu---- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 28964 0.74 0.998247
Target:  5'- -cUGUAUAGCUUAGGUGUUAAc---- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUuccca -5'
28254 5' -43.2 NC_005902.1 + 149952 0.73 0.999041
Target:  5'- --------cCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccauauaucGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 162688 0.73 0.999226
Target:  5'- uGGUGUcAUcGCUUaaAGGgGUUAAAGGGUa -3'
miRNA:   3'- -CCAUA-UAuCGAA--UCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 104205 1.02 0.158833
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 125576 1 0.182277
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 67032 0.96 0.316148
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 154625 0.93 0.411501
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 167185 0.91 0.491083
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.