Results 101 - 120 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 26531 | 0.73 | 0.999041 |
Target: 5'- aGUAUAuaaUAGCUUAaaUGUUAAAGGGUu -3' miRNA: 3'- cCAUAU---AUCGAAUccACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 85373 | 0.73 | 0.999379 |
Target: 5'- -aUAUAUAGCUUAGauaUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUCcacAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 58263 | 0.72 | 0.999692 |
Target: 5'- aGUAUAUAGCUUcaGUGUUAAAaGGUa -3' miRNA: 3'- cCAUAUAUCGAAucCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 131104 | 0.71 | 0.999857 |
Target: 5'- -aUAUAUAGCUUAaGUaUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUcCAcAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 25161 | 0.71 | 0.999891 |
Target: 5'- aGUAUAUAGCUUAGGgGUUAAAu--- -3' miRNA: 3'- cCAUAUAUCGAAUCCaCAAUUUccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 110138 | 0.82 | 0.896412 |
Target: 5'- uGUAUAUAGCUUAGGUaUUAAAGGa- -3' miRNA: 3'- cCAUAUAUCGAAUCCAcAAUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 63399 | 0.83 | 0.865843 |
Target: 5'- uGUAUAUAGCUUAGaUGUUAAAGaGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUC-CCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 104205 | 1.02 | 0.158833 |
Target: 5'- -uUAUAUAGCUUAGGUGUUAAAGGGUa -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 125576 | 1 | 0.182277 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 67032 | 0.96 | 0.316148 |
Target: 5'- aGUAUAUAGCUUAGGaGUUAAAGGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCaCAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 154625 | 0.93 | 0.411501 |
Target: 5'- uGUAUAUAGCUUAGGUaUUAAAGGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 167185 | 0.91 | 0.491083 |
Target: 5'- cGUAUAUAGCUUAGGUGUUAAAaGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 52367 | 0.91 | 0.512093 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGaGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 29611 | 0.9 | 0.522738 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAaGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 134192 | 0.9 | 0.533466 |
Target: 5'- uGUAUAUAGCUUAGaUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 169577 | 0.87 | 0.698999 |
Target: 5'- aGUGUAUAGUUUAGGUGUUAAAaGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 76246 | 0.87 | 0.709904 |
Target: 5'- -aUAUAUAaCUUAGGUGUUAAAGGGUg -3' miRNA: 3'- ccAUAUAUcGAAUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 74813 | 0.85 | 0.763023 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAaGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 144191 | 0.85 | 0.793339 |
Target: 5'- uGUAUAUAGUUUAGaUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 86056 | 0.84 | 0.822108 |
Target: 5'- -aUAUAUAGCUUAGaUGUUAAAGGGg -3' miRNA: 3'- ccAUAUAUCGAAUCcACAAUUUCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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