miRNA display CGI


Results 121 - 140 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28254 5' -43.2 NC_005902.1 + 1178 0.91 0.50154
Target:  5'- -aUAUAUacAGCUUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUA--UCGAAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 134439 0.73 0.999379
Target:  5'- ------cAGCUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- ccauauaUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 99599 0.73 0.999226
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGa-- -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 48290 0.87 0.698999
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGUa -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 109956 0.87 0.709904
Target:  5'- -aUAUAUAGCUUAGGUcUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 145976 0.85 0.763023
Target:  5'- -aUAUAUAGCUUAaGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUcCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 170619 0.84 0.812709
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGaGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 50229 0.83 0.857561
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAGa-- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUCcca -5'
28254 5' -43.2 NC_005902.1 + 134368 0.82 0.889166
Target:  5'- aGUAUAUAGCUUAaGUGUUaAAAGGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAA-UUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 29135 0.81 0.922634
Target:  5'- -aUAUAUAGUUUAGGUaUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUCGAAUCCAcAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 116672 0.79 0.968697
Target:  5'- --cAUAUAGUUUAGGUGUUAAAcGGUa -3'
miRNA:   3'- ccaUAUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 154953 0.78 0.977481
Target:  5'- uGUucAUAGCUUGGGUGUUAAAaGGUg -3'
miRNA:   3'- cCAuaUAUCGAAUCCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 3109 0.77 0.986181
Target:  5'- -aUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 157888 0.77 0.987885
Target:  5'- -uUAUAUAGCUUAGGUGUUAAAa--- -3'
miRNA:   3'- ccAUAUAUCGAAUCCACAAUUUccca -5'
28254 5' -43.2 NC_005902.1 + 67748 0.76 0.993136
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAaGGUu -3'
miRNA:   3'- cCAUAUAUCGAAUcCACAAUUUcCCA- -5'
28254 5' -43.2 NC_005902.1 + 69098 0.75 0.99497
Target:  5'- -uUAUAUAaCcUAGGUGUUAAAGGGUu -3'
miRNA:   3'- ccAUAUAUcGaAUCCACAAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 68110 0.74 0.997455
Target:  5'- --cAUAUAaCUUAGGUGgUAGAGGGUa -3'
miRNA:   3'- ccaUAUAUcGAAUCCACaAUUUCCCA- -5'
28254 5' -43.2 NC_005902.1 + 23290 0.74 0.998821
Target:  5'- --cAUAUAGCUUAaaUGUUAAAGGGa -3'
miRNA:   3'- ccaUAUAUCGAAUccACAAUUUCCCa -5'
28254 5' -43.2 NC_005902.1 + 99651 0.91 0.512093
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGaGUa -3'
miRNA:   3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5'
28254 5' -43.2 NC_005902.1 + 136001 0.94 0.38378
Target:  5'- ----cAUAGCUUAGGUGUUAAAGGGUa -3'
miRNA:   3'- ccauaUAUCGAAUCCACAAUUUCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.