Results 141 - 160 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28254 | 5' | -43.2 | NC_005902.1 | + | 146763 | 0.91 | 0.512093 |
Target: 5'- aGUAUAUacauGGUUUAGGUGUUAGAGGGUa -3' miRNA: 3'- cCAUAUA----UCGAAUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 182967 | 0.77 | 0.989422 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAucGUu -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUccCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 28192 | 0.77 | 0.989422 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAu--- -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUccca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 149879 | 0.76 | 0.990802 |
Target: 5'- -aUAUAUAGCUUAGaUGUUaAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCcACAA-UUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 120290 | 0.76 | 0.992037 |
Target: 5'- -aUAUAUAGUUcAGGUGUUAAAGGa- -3' miRNA: 3'- ccAUAUAUCGAaUCCACAAUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 43022 | 0.91 | 0.512093 |
Target: 5'- aGUAUAUAGCUUAGaUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 40095 | 0.91 | 0.512093 |
Target: 5'- aGUAUAUAGCUUAGaUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 155244 | 0.91 | 0.50154 |
Target: 5'- cGUAUAUAGCUUAGaUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUCcACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 13436 | 0.91 | 0.50154 |
Target: 5'- aGUAUAUAGCUUAaGUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUCGAAUcCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 43887 | 0.91 | 0.491083 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGaGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUCcCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 140962 | 0.92 | 0.44043 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAaGGUa -3' miRNA: 3'- cCAUAUAUCGAAUCCACAAUUUcCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 145073 | 0.93 | 0.411501 |
Target: 5'- uGUAUAUAGCUUAGGUaUUAAAGGGUg -3' miRNA: 3'- cCAUAUAUCGAAUCCAcAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 136001 | 0.94 | 0.38378 |
Target: 5'- ----cAUAGCUUAGGUGUUAAAGGGUa -3' miRNA: 3'- ccauaUAUCGAAUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 49473 | 0.91 | 0.512093 |
Target: 5'- aGUAUAUAaCUUAGGUGUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUcGAAUCCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 133704 | 0.71 | 0.999891 |
Target: 5'- --aAUGUAGCgagugagUAuGUGUUAAAGGGUa -3' miRNA: 3'- ccaUAUAUCGa------AUcCACAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 175654 | 0.7 | 0.999966 |
Target: 5'- aGUAUAUAGUUUAaGUaUUAAAGGGg -3' miRNA: 3'- cCAUAUAUCGAAUcCAcAAUUUCCCa -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 22655 | 0.76 | 0.990802 |
Target: 5'- -aUAUAUAGCUUAGaUGUUaAAAGGGUu -3' miRNA: 3'- ccAUAUAUCGAAUCcACAA-UUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 131991 | 0.91 | 0.512093 |
Target: 5'- -aUAUAUAGCUUAGGUGUUAAAGGa- -3' miRNA: 3'- ccAUAUAUCGAAUCCACAAUUUCCca -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 173499 | 0.71 | 0.999857 |
Target: 5'- uGUAUAUAaUUUAGGUaUUAAAGGGUu -3' miRNA: 3'- cCAUAUAUcGAAUCCAcAAUUUCCCA- -5' |
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28254 | 5' | -43.2 | NC_005902.1 | + | 16600 | 0.76 | 0.993136 |
Target: 5'- -aUAUAcAGCUUAaGUGUUAAAGGGUu -3' miRNA: 3'- ccAUAUaUCGAAUcCACAAUUUCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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